/* * Copyright (C) 2008-2010, Google Inc. * Copyright (C) 2008, Shawn O. Pearce * Copyright (C) 2011, Matthias Sohn * and other copyright owners as documented in the project's IP log. * * This program and the accompanying materials are made available * under the terms of the Eclipse Distribution License v1.0 which * accompanies this distribution, is reproduced below, and is * available at http://www.eclipse.org/org/documents/edl-v10.php * * All rights reserved. * * Redistribution and use in source and binary forms, with or * without modification, are permitted provided that the following * conditions are met: * * - Redistributions of source code must retain the above copyright * notice, this list of conditions and the following disclaimer. * * - Redistributions in binary form must reproduce the above * copyright notice, this list of conditions and the following * disclaimer in the documentation and/or other materials provided * with the distribution. * * - Neither the name of the Eclipse Foundation, Inc. nor the * names of its contributors may be used to endorse or promote * products derived from this software without specific prior * written permission. * * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND * CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, * INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES * OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE * ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR * CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, * SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT * NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER * CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, * STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) * ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF * ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. */ package org.eclipse.jgit.dircache; import static java.nio.charset.StandardCharsets.ISO_8859_1; import java.io.BufferedInputStream; import java.io.BufferedOutputStream; import java.io.EOFException; import java.io.File; import java.io.FileNotFoundException; import java.io.IOException; import java.io.InputStream; import java.io.OutputStream; import java.security.DigestOutputStream; import java.security.MessageDigest; import java.text.MessageFormat; import java.time.Instant; import java.util.ArrayList; import java.util.Arrays; import java.util.Comparator; import java.util.List; import org.eclipse.jgit.errors.CorruptObjectException; import org.eclipse.jgit.errors.IndexReadException; import org.eclipse.jgit.errors.LockFailedException; import org.eclipse.jgit.errors.UnmergedPathException; import org.eclipse.jgit.events.IndexChangedEvent; import org.eclipse.jgit.events.IndexChangedListener; import org.eclipse.jgit.internal.JGitText; import org.eclipse.jgit.internal.storage.file.FileSnapshot; import org.eclipse.jgit.internal.storage.file.LockFile; import org.eclipse.jgit.lib.AnyObjectId; import org.eclipse.jgit.lib.Constants; import org.eclipse.jgit.lib.ObjectId; import org.eclipse.jgit.lib.ObjectInserter; import org.eclipse.jgit.lib.ObjectReader; import org.eclipse.jgit.lib.Repository; import org.eclipse.jgit.treewalk.FileTreeIterator; import org.eclipse.jgit.treewalk.TreeWalk; import org.eclipse.jgit.treewalk.TreeWalk.OperationType; import org.eclipse.jgit.treewalk.filter.PathFilterGroup; import org.eclipse.jgit.util.FS; import org.eclipse.jgit.util.IO; import org.eclipse.jgit.util.MutableInteger; import org.eclipse.jgit.util.NB; import org.eclipse.jgit.util.TemporaryBuffer; import org.eclipse.jgit.util.io.SilentFileInputStream; /** * Support for the Git dircache (aka index file). *

* The index file keeps track of which objects are currently checked out in the * working directory, and the last modified time of those working files. Changes * in the working directory can be detected by comparing the modification times * to the cached modification time within the index file. *

* Index files are also used during merges, where the merge happens within the * index file first, and the working directory is updated as a post-merge step. * Conflicts are stored in the index file to allow tool (and human) based * resolutions to be easily performed. */ public class DirCache { private static final byte[] SIG_DIRC = { 'D', 'I', 'R', 'C' }; private static final int EXT_TREE = 0x54524545 /* 'TREE' */; private static final DirCacheEntry[] NO_ENTRIES = {}; private static final byte[] NO_CHECKSUM = {}; static final Comparator ENT_CMP = (DirCacheEntry o1, DirCacheEntry o2) -> { final int cr = cmp(o1, o2); if (cr != 0) return cr; return o1.getStage() - o2.getStage(); }; static int cmp(DirCacheEntry a, DirCacheEntry b) { return cmp(a.path, a.path.length, b); } static int cmp(byte[] aPath, int aLen, DirCacheEntry b) { return cmp(aPath, aLen, b.path, b.path.length); } static int cmp(final byte[] aPath, final int aLen, final byte[] bPath, final int bLen) { for (int cPos = 0; cPos < aLen && cPos < bLen; cPos++) { final int cmp = (aPath[cPos] & 0xff) - (bPath[cPos] & 0xff); if (cmp != 0) return cmp; } return aLen - bLen; } /** * Create a new empty index which is never stored on disk. * * @return an empty cache which has no backing store file. The cache may not * be read or written, but it may be queried and updated (in * memory). */ public static DirCache newInCore() { return new DirCache(null, null); } /** * Create a new in memory index read from the contents of a tree. * * @param reader * reader to access the tree objects from a repository. * @param treeId * tree to read. Must identify a tree, not a tree-ish. * @return a new cache which has no backing store file, but contains the * contents of {@code treeId}. * @throws java.io.IOException * one or more trees not available from the ObjectReader. * @since 4.2 */ public static DirCache read(ObjectReader reader, AnyObjectId treeId) throws IOException { DirCache d = newInCore(); DirCacheBuilder b = d.builder(); b.addTree(null, DirCacheEntry.STAGE_0, reader, treeId); b.finish(); return d; } /** * Create a new in-core index representation and read an index from disk. *

* The new index will be read before it is returned to the caller. Read * failures are reported as exceptions and therefore prevent the method from * returning a partially populated index. * * @param repository * repository containing the index to read * @return a cache representing the contents of the specified index file (if * it exists) or an empty cache if the file does not exist. * @throws java.io.IOException * the index file is present but could not be read. * @throws org.eclipse.jgit.errors.CorruptObjectException * the index file is using a format or extension that this * library does not support. */ public static DirCache read(Repository repository) throws CorruptObjectException, IOException { final DirCache c = read(repository.getIndexFile(), repository.getFS()); c.repository = repository; return c; } /** * Create a new in-core index representation and read an index from disk. *

* The new index will be read before it is returned to the caller. Read * failures are reported as exceptions and therefore prevent the method from * returning a partially populated index. * * @param indexLocation * location of the index file on disk. * @param fs * the file system abstraction which will be necessary to perform * certain file system operations. * @return a cache representing the contents of the specified index file (if * it exists) or an empty cache if the file does not exist. * @throws java.io.IOException * the index file is present but could not be read. * @throws org.eclipse.jgit.errors.CorruptObjectException * the index file is using a format or extension that this * library does not support. */ public static DirCache read(File indexLocation, FS fs) throws CorruptObjectException, IOException { final DirCache c = new DirCache(indexLocation, fs); c.read(); return c; } /** * Create a new in-core index representation, lock it, and read from disk. *

* The new index will be locked and then read before it is returned to the * caller. Read failures are reported as exceptions and therefore prevent * the method from returning a partially populated index. On read failure, * the lock is released. * * @param indexLocation * location of the index file on disk. * @param fs * the file system abstraction which will be necessary to perform * certain file system operations. * @param indexChangedListener * listener to be informed when DirCache is committed * @return a cache representing the contents of the specified index file (if * it exists) or an empty cache if the file does not exist. * @throws java.io.IOException * the index file is present but could not be read, or the lock * could not be obtained. * @throws org.eclipse.jgit.errors.CorruptObjectException * the index file is using a format or extension that this * library does not support. */ public static DirCache lock(final File indexLocation, final FS fs, IndexChangedListener indexChangedListener) throws CorruptObjectException, IOException { DirCache c = lock(indexLocation, fs); c.registerIndexChangedListener(indexChangedListener); return c; } /** Location of the current version of the index file. */ private final File liveFile; /** Individual file index entries, sorted by path name. */ private DirCacheEntry[] sortedEntries; /** Number of positions within {@link #sortedEntries} that are valid. */ private int entryCnt; /** Cache tree for this index; null if the cache tree is not available. */ private DirCacheTree tree; /** Our active lock (if we hold it); null if we don't have it locked. */ private LockFile myLock; /** Keep track of whether the index has changed or not */ private FileSnapshot snapshot; /** index checksum when index was read from disk */ private byte[] readIndexChecksum; /** index checksum when index was written to disk */ private byte[] writeIndexChecksum; /** listener to be informed on commit */ private IndexChangedListener indexChangedListener; /** Repository containing this index */ private Repository repository; /** * Create a new in-core index representation. *

* The new index will be empty. Callers may wish to read from the on disk * file first with {@link #read()}. * * @param indexLocation * location of the index file on disk. * @param fs * the file system abstraction which will be necessary to perform * certain file system operations. */ public DirCache(File indexLocation, FS fs) { liveFile = indexLocation; clear(); } /** * Create a new builder to update this cache. *

* Callers should add all entries to the builder, then use * {@link org.eclipse.jgit.dircache.DirCacheBuilder#finish()} to update this * instance. * * @return a new builder instance for this cache. */ public DirCacheBuilder builder() { return new DirCacheBuilder(this, entryCnt + 16); } /** * Create a new editor to recreate this cache. *

* Callers should add commands to the editor, then use * {@link org.eclipse.jgit.dircache.DirCacheEditor#finish()} to update this * instance. * * @return a new builder instance for this cache. */ public DirCacheEditor editor() { return new DirCacheEditor(this, entryCnt + 16); } void replace(DirCacheEntry[] e, int cnt) { sortedEntries = e; entryCnt = cnt; tree = null; } /** * Read the index from disk, if it has changed on disk. *

* This method tries to avoid loading the index if it has not changed since * the last time we consulted it. A missing index file will be treated as * though it were present but had no file entries in it. * * @throws java.io.IOException * the index file is present but could not be read. This * DirCache instance may not be populated correctly. * @throws org.eclipse.jgit.errors.CorruptObjectException * the index file is using a format or extension that this * library does not support. */ public void read() throws IOException, CorruptObjectException { if (liveFile == null) throw new IOException(JGitText.get().dirCacheDoesNotHaveABackingFile); if (!liveFile.exists()) clear(); else if (snapshot == null || snapshot.isModified(liveFile)) { try (SilentFileInputStream inStream = new SilentFileInputStream( liveFile)) { clear(); readFrom(inStream); } catch (FileNotFoundException fnfe) { if (liveFile.exists()) { // Panic: the index file exists but we can't read it throw new IndexReadException( MessageFormat.format(JGitText.get().cannotReadIndex, liveFile.getAbsolutePath(), fnfe)); } // Someone must have deleted it between our exists test // and actually opening the path. That's fine, its empty. // clear(); } snapshot = FileSnapshot.save(liveFile); } } /** * Whether the memory state differs from the index file * * @return {@code true} if the memory state differs from the index file * @throws java.io.IOException */ public boolean isOutdated() throws IOException { if (liveFile == null || !liveFile.exists()) return false; return snapshot == null || snapshot.isModified(liveFile); } /** * Empty this index, removing all entries. */ public void clear() { snapshot = null; sortedEntries = NO_ENTRIES; entryCnt = 0; tree = null; readIndexChecksum = NO_CHECKSUM; } private void readFrom(InputStream inStream) throws IOException, CorruptObjectException { final BufferedInputStream in = new BufferedInputStream(inStream); final MessageDigest md = Constants.newMessageDigest(); // Read the index header and verify we understand it. // final byte[] hdr = new byte[20]; IO.readFully(in, hdr, 0, 12); md.update(hdr, 0, 12); if (!is_DIRC(hdr)) throw new CorruptObjectException(JGitText.get().notADIRCFile); final int ver = NB.decodeInt32(hdr, 4); boolean extended = false; if (ver == 3) extended = true; else if (ver != 2) throw new CorruptObjectException(MessageFormat.format( JGitText.get().unknownDIRCVersion, Integer.valueOf(ver))); entryCnt = NB.decodeInt32(hdr, 8); if (entryCnt < 0) throw new CorruptObjectException(JGitText.get().DIRCHasTooManyEntries); snapshot = FileSnapshot.save(liveFile); Instant smudge = snapshot.lastModifiedInstant(); // Load the individual file entries. // final int infoLength = DirCacheEntry.getMaximumInfoLength(extended); final byte[] infos = new byte[infoLength * entryCnt]; sortedEntries = new DirCacheEntry[entryCnt]; final MutableInteger infoAt = new MutableInteger(); for (int i = 0; i < entryCnt; i++) { sortedEntries[i] = new DirCacheEntry(infos, infoAt, in, md, smudge); } // After the file entries are index extensions, and then a footer. // for (;;) { in.mark(21); IO.readFully(in, hdr, 0, 20); if (in.read() < 0) { // No extensions present; the file ended where we expected. // break; } in.reset(); md.update(hdr, 0, 8); IO.skipFully(in, 8); long sz = NB.decodeUInt32(hdr, 4); switch (NB.decodeInt32(hdr, 0)) { case EXT_TREE: { if (Integer.MAX_VALUE < sz) { throw new CorruptObjectException(MessageFormat.format( JGitText.get().DIRCExtensionIsTooLargeAt, formatExtensionName(hdr), Long.valueOf(sz))); } final byte[] raw = new byte[(int) sz]; IO.readFully(in, raw, 0, raw.length); md.update(raw, 0, raw.length); tree = new DirCacheTree(raw, new MutableInteger(), null); break; } default: if (hdr[0] >= 'A' && hdr[0] <= 'Z') { // The extension is optional and is here only as // a performance optimization. Since we do not // understand it, we can safely skip past it, after // we include its data in our checksum. // skipOptionalExtension(in, md, hdr, sz); } else { // The extension is not an optimization and is // _required_ to understand this index format. // Since we did not trap it above we must abort. // throw new CorruptObjectException(MessageFormat.format(JGitText.get().DIRCExtensionNotSupportedByThisVersion , formatExtensionName(hdr))); } } } readIndexChecksum = md.digest(); if (!Arrays.equals(readIndexChecksum, hdr)) { throw new CorruptObjectException(JGitText.get().DIRCChecksumMismatch); } } private void skipOptionalExtension(final InputStream in, final MessageDigest md, final byte[] hdr, long sz) throws IOException { final byte[] b = new byte[4096]; while (0 < sz) { int n = in.read(b, 0, (int) Math.min(b.length, sz)); if (n < 0) { throw new EOFException( MessageFormat.format( JGitText.get().shortReadOfOptionalDIRCExtensionExpectedAnotherBytes, formatExtensionName(hdr), Long.valueOf(sz))); } md.update(b, 0, n); sz -= n; } } private static String formatExtensionName(byte[] hdr) { return "'" + new String(hdr, 0, 4, ISO_8859_1) + "'"; //$NON-NLS-1$ //$NON-NLS-2$ } private static boolean is_DIRC(byte[] hdr) { if (hdr.length < SIG_DIRC.length) return false; for (int i = 0; i < SIG_DIRC.length; i++) if (hdr[i] != SIG_DIRC[i]) return false; return true; } /** * Try to establish an update lock on the cache file. * * @return true if the lock is now held by the caller; false if it is held * by someone else. * @throws java.io.IOException * the output file could not be created. The caller does not * hold the lock. */ public boolean lock() throws IOException { if (liveFile == null) throw new IOException(JGitText.get().dirCacheDoesNotHaveABackingFile); final LockFile tmp = new LockFile(liveFile); if (tmp.lock()) { tmp.setNeedStatInformation(true); myLock = tmp; return true; } return false; } /** * Write the entry records from memory to disk. *

* The cache must be locked first by calling {@link #lock()} and receiving * true as the return value. Applications are encouraged to lock the index, * then invoke {@link #read()} to ensure the in-memory data is current, * prior to updating the in-memory entries. *

* Once written the lock is closed and must be either committed with * {@link #commit()} or rolled back with {@link #unlock()}. * * @throws java.io.IOException * the output file could not be created. The caller no longer * holds the lock. */ public void write() throws IOException { final LockFile tmp = myLock; requireLocked(tmp); try (OutputStream o = tmp.getOutputStream(); OutputStream bo = new BufferedOutputStream(o)) { writeTo(liveFile.getParentFile(), bo); } catch (IOException | RuntimeException | Error err) { tmp.unlock(); throw err; } } void writeTo(File dir, OutputStream os) throws IOException { final MessageDigest foot = Constants.newMessageDigest(); final DigestOutputStream dos = new DigestOutputStream(os, foot); boolean extended = false; for (int i = 0; i < entryCnt; i++) { if (sortedEntries[i].isExtended()) { extended = true; break; } } // Write the header. // final byte[] tmp = new byte[128]; System.arraycopy(SIG_DIRC, 0, tmp, 0, SIG_DIRC.length); NB.encodeInt32(tmp, 4, extended ? 3 : 2); NB.encodeInt32(tmp, 8, entryCnt); dos.write(tmp, 0, 12); // Write the individual file entries. Instant smudge; if (myLock != null) { // For new files we need to smudge the index entry // if they have been modified "now". Ideally we'd // want the timestamp when we're done writing the index, // so we use the current timestamp as a approximation. myLock.createCommitSnapshot(); snapshot = myLock.getCommitSnapshot(); smudge = snapshot.lastModifiedInstant(); } else { // Used in unit tests only smudge = Instant.EPOCH; } // Check if tree is non-null here since calling updateSmudgedEntries // will automatically build it via creating a DirCacheIterator final boolean writeTree = tree != null; if (repository != null && entryCnt > 0) updateSmudgedEntries(); for (int i = 0; i < entryCnt; i++) { final DirCacheEntry e = sortedEntries[i]; if (e.mightBeRacilyClean(smudge)) { e.smudgeRacilyClean(); } e.write(dos); } if (writeTree) { @SuppressWarnings("resource") // Explicitly closed in try block, and // destroyed in finally TemporaryBuffer bb = new TemporaryBuffer.LocalFile(dir, 5 << 20); try { tree.write(tmp, bb); bb.close(); NB.encodeInt32(tmp, 0, EXT_TREE); NB.encodeInt32(tmp, 4, (int) bb.length()); dos.write(tmp, 0, 8); bb.writeTo(dos, null); } finally { bb.destroy(); } } writeIndexChecksum = foot.digest(); os.write(writeIndexChecksum); os.close(); } /** * Commit this change and release the lock. *

* If this method fails (returns false) the lock is still released. * * @return true if the commit was successful and the file contains the new * data; false if the commit failed and the file remains with the * old data. * @throws java.lang.IllegalStateException * the lock is not held. */ public boolean commit() { final LockFile tmp = myLock; requireLocked(tmp); myLock = null; if (!tmp.commit()) { return false; } snapshot = tmp.getCommitSnapshot(); if (indexChangedListener != null && !Arrays.equals(readIndexChecksum, writeIndexChecksum)) { indexChangedListener.onIndexChanged(new IndexChangedEvent(true)); } return true; } private void requireLocked(LockFile tmp) { if (liveFile == null) throw new IllegalStateException(JGitText.get().dirCacheIsNotLocked); if (tmp == null) throw new IllegalStateException(MessageFormat.format(JGitText.get().dirCacheFileIsNotLocked , liveFile.getAbsolutePath())); } /** * Unlock this file and abort this change. *

* The temporary file (if created) is deleted before returning. */ public void unlock() { final LockFile tmp = myLock; if (tmp != null) { myLock = null; tmp.unlock(); } } /** * Locate the position a path's entry is at in the index. For details refer * to #findEntry(byte[], int). * * @param path * the path to search for. * @return if >= 0 then the return value is the position of the entry in * the index; pass to {@link #getEntry(int)} to obtain the entry * information. If < 0 the entry does not exist in the index. */ public int findEntry(String path) { final byte[] p = Constants.encode(path); return findEntry(p, p.length); } /** * Locate the position a path's entry is at in the index. *

* If there is at least one entry in the index for this path the position of * the lowest stage is returned. Subsequent stages can be identified by * testing consecutive entries until the path differs. *

* If no path matches the entry -(position+1) is returned, where position is * the location it would have gone within the index. * * @param p * the byte array starting with the path to search for. * @param pLen * the length of the path in bytes * @return if >= 0 then the return value is the position of the entry in * the index; pass to {@link #getEntry(int)} to obtain the entry * information. If < 0 the entry does not exist in the index. * @since 3.4 */ public int findEntry(byte[] p, int pLen) { return findEntry(0, p, pLen); } int findEntry(int low, byte[] p, int pLen) { int high = entryCnt; while (low < high) { int mid = (low + high) >>> 1; final int cmp = cmp(p, pLen, sortedEntries[mid]); if (cmp < 0) high = mid; else if (cmp == 0) { while (mid > 0 && cmp(p, pLen, sortedEntries[mid - 1]) == 0) mid--; return mid; } else low = mid + 1; } return -(low + 1); } /** * Determine the next index position past all entries with the same name. *

* As index entries are sorted by path name, then stage number, this method * advances the supplied position to the first position in the index whose * path name does not match the path name of the supplied position's entry. * * @param position * entry position of the path that should be skipped. * @return position of the next entry whose path is after the input. */ public int nextEntry(int position) { DirCacheEntry last = sortedEntries[position]; int nextIdx = position + 1; while (nextIdx < entryCnt) { final DirCacheEntry next = sortedEntries[nextIdx]; if (cmp(last, next) != 0) break; last = next; nextIdx++; } return nextIdx; } int nextEntry(byte[] p, int pLen, int nextIdx) { while (nextIdx < entryCnt) { final DirCacheEntry next = sortedEntries[nextIdx]; if (!DirCacheTree.peq(p, next.path, pLen)) break; nextIdx++; } return nextIdx; } /** * Total number of file entries stored in the index. *

* This count includes unmerged stages for a file entry if the file is * currently conflicted in a merge. This means the total number of entries * in the index may be up to 3 times larger than the number of files in the * working directory. *

* Note that this value counts only files. * * @return number of entries available. * @see #getEntry(int) */ public int getEntryCount() { return entryCnt; } /** * Get a specific entry. * * @param i * position of the entry to get. * @return the entry at position i. */ public DirCacheEntry getEntry(int i) { return sortedEntries[i]; } /** * Get a specific entry. * * @param path * the path to search for. * @return the entry for the given path. */ public DirCacheEntry getEntry(String path) { final int i = findEntry(path); return i < 0 ? null : sortedEntries[i]; } /** * Recursively get all entries within a subtree. * * @param path * the subtree path to get all entries within. * @return all entries recursively contained within the subtree. */ public DirCacheEntry[] getEntriesWithin(String path) { if (path.length() == 0) { DirCacheEntry[] r = new DirCacheEntry[entryCnt]; System.arraycopy(sortedEntries, 0, r, 0, entryCnt); return r; } if (!path.endsWith("/")) //$NON-NLS-1$ path += "/"; //$NON-NLS-1$ final byte[] p = Constants.encode(path); final int pLen = p.length; int eIdx = findEntry(p, pLen); if (eIdx < 0) eIdx = -(eIdx + 1); final int lastIdx = nextEntry(p, pLen, eIdx); final DirCacheEntry[] r = new DirCacheEntry[lastIdx - eIdx]; System.arraycopy(sortedEntries, eIdx, r, 0, r.length); return r; } void toArray(final int i, final DirCacheEntry[] dst, final int off, final int cnt) { System.arraycopy(sortedEntries, i, dst, off, cnt); } /** * Obtain (or build) the current cache tree structure. *

* This method can optionally recreate the cache tree, without flushing the * tree objects themselves to disk. * * @param build * if true and the cache tree is not present in the index it will * be generated and returned to the caller. * @return the cache tree; null if there is no current cache tree available * and build was false. */ public DirCacheTree getCacheTree(boolean build) { if (build) { if (tree == null) tree = new DirCacheTree(); tree.validate(sortedEntries, entryCnt, 0, 0); } return tree; } /** * Write all index trees to the object store, returning the root tree. * * @param ow * the writer to use when serializing to the store. The caller is * responsible for flushing the inserter before trying to use the * returned tree identity. * @return identity for the root tree. * @throws org.eclipse.jgit.errors.UnmergedPathException * one or more paths contain higher-order stages (stage > 0), * which cannot be stored in a tree object. * @throws java.lang.IllegalStateException * one or more paths contain an invalid mode which should never * appear in a tree object. * @throws java.io.IOException * an unexpected error occurred writing to the object store. */ public ObjectId writeTree(ObjectInserter ow) throws UnmergedPathException, IOException { return getCacheTree(true).writeTree(sortedEntries, 0, 0, ow); } /** * Tells whether this index contains unmerged paths. * * @return {@code true} if this index contains unmerged paths. Means: at * least one entry is of a stage different from 0. {@code false} * will be returned if all entries are of stage 0. */ public boolean hasUnmergedPaths() { for (int i = 0; i < entryCnt; i++) { if (sortedEntries[i].getStage() > 0) { return true; } } return false; } private void registerIndexChangedListener(IndexChangedListener listener) { this.indexChangedListener = listener; } /** * Update any smudged entries with information from the working tree. * * @throws IOException */ private void updateSmudgedEntries() throws IOException { List paths = new ArrayList<>(128); try (TreeWalk walk = new TreeWalk(repository)) { walk.setOperationType(OperationType.CHECKIN_OP); for (int i = 0; i < entryCnt; i++) if (sortedEntries[i].isSmudged()) paths.add(sortedEntries[i].getPathString()); if (paths.isEmpty()) return; walk.setFilter(PathFilterGroup.createFromStrings(paths)); DirCacheIterator iIter = new DirCacheIterator(this); FileTreeIterator fIter = new FileTreeIterator(repository); walk.addTree(iIter); walk.addTree(fIter); fIter.setDirCacheIterator(walk, 0); walk.setRecursive(true); while (walk.next()) { iIter = walk.getTree(0, DirCacheIterator.class); if (iIter == null) continue; fIter = walk.getTree(1, FileTreeIterator.class); if (fIter == null) continue; DirCacheEntry entry = iIter.getDirCacheEntry(); if (entry.isSmudged() && iIter.idEqual(fIter)) { entry.setLength(fIter.getEntryLength()); entry.setLastModified(fIter.getEntryLastModifiedInstant()); } } } } }