Bump JGit version to 3.0.0-SNAPSHOT

build.moxie

 description: pure Java Git solution
 groupId: com.gitblit
 artifactId: gitblit
-version: 1.3.0-SNAPSHOT
+version: 1.4.0-SNAPSHOT
 inceptionYear: 2011
 
 # Current stable release
   jetty.version  : 7.6.8.v20121106
   wicket.version : 1.4.21
   lucene.version : 3.6.1
-  jgit.version   : 2.3.1.201302201838-r
+  jgit.version   : 3.0.0-SNAPSHOT
   groovy.version : 1.8.8
   bouncycastle.version : 1.47
   selenium.version : 2.28.0

src/main/java/com/gitblit/AddIndexedBranch.java

 import java.util.Set;
 import java.util.TreeSet;
 
+import org.eclipse.jgit.lib.Repository;
 import org.eclipse.jgit.lib.RepositoryCache.FileKey;
 import org.eclipse.jgit.storage.file.FileBasedConfig;
-import org.eclipse.jgit.storage.file.FileRepository;
+import org.eclipse.jgit.storage.file.FileRepositoryBuilder;
+import org.eclipse.jgit.internal.storage.file.FileRepository;
 import org.eclipse.jgit.util.FS;
 
 import com.beust.jcommander.JCommander;
 			try {
 				// load repository config
 				File gitDir = FileKey.resolve(new File(folder, repo), FS.DETECTED);
-				FileRepository repository = new FileRepository(gitDir);
+				FileRepository repository = (FileRepository)new FileRepositoryBuilder().setGitDir(gitDir).build();
 				FileBasedConfig config = repository.getConfig();
 				config.load();
 				

src/main/java/com/gitblit/GCExecutor.java

 import java.util.concurrent.atomic.AtomicInteger;
 
 import org.eclipse.jgit.lib.Repository;
-import org.eclipse.jgit.storage.file.FileRepository;
-import org.eclipse.jgit.storage.file.GC;
-import org.eclipse.jgit.storage.file.GC.RepoStatistics;
+import org.eclipse.jgit.internal.storage.file.FileRepository;
+import org.eclipse.jgit.internal.storage.file.GC;
+import org.eclipse.jgit.internal.storage.file.GC.RepoStatistics;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 

src/main/java/com/gitblit/GitBlit.java

 import org.eclipse.jgit.lib.RepositoryCache.FileKey;
 import org.eclipse.jgit.lib.StoredConfig;
 import org.eclipse.jgit.storage.file.FileBasedConfig;
-import org.eclipse.jgit.storage.file.WindowCache;
+import org.eclipse.jgit.internal.storage.file.WindowCache;
 import org.eclipse.jgit.storage.file.WindowCacheConfig;
 import org.eclipse.jgit.util.FS;
 import org.eclipse.jgit.util.FileUtils;

src/main/java/com/gitblit/utils/JGitUtils.java

 import org.eclipse.jgit.revwalk.RevWalk;
 import org.eclipse.jgit.revwalk.filter.CommitTimeRevFilter;
 import org.eclipse.jgit.revwalk.filter.RevFilter;
-import org.eclipse.jgit.storage.file.FileRepository;
+import org.eclipse.jgit.internal.storage.file.FileRepository;
+import org.eclipse.jgit.storage.file.FileRepositoryBuilder;
 import org.eclipse.jgit.transport.CredentialsProvider;
 import org.eclipse.jgit.transport.FetchResult;
 import org.eclipse.jgit.transport.RefSpec;
 		File folder = new File(repositoriesFolder, name);
 		if (folder.exists()) {
 			File gitDir = FileKey.resolve(new File(repositoriesFolder, name), FS.DETECTED);
-			FileRepository repository = new FileRepository(gitDir);
+			FileRepository repository = (FileRepository)new FileRepositoryBuilder().setGitDir(gitDir).build();
 			result.fetchResult = fetchRepository(credentialsProvider, repository);
 			repository.close();
 		} else {