The function `GetByBean` has an obvious defect that when the fields are
empty values, it will be ignored. Then users will get a wrong result
which is possibly used to make a security problem.

To avoid the possibility, this PR removed function `GetByBean` and all
references.
And some new generic functions have been introduced to be used.

The recommand usage like below.

```go
// if query an object according id
obj, err := db.GetByID[Object](ctx, id)
// query with other conditions
obj, err := db.Get[Object](ctx, builder.Eq{"a": a, "b":b})
```

Last part of #27065

The merge and update branch code was previously a little tangled and had
some very long functions. The functions were not very clear in their
reasoning and there were deficiencies in their logging and at least one
bug in the handling of LFS for update by rebase.

This PR substantially refactors this code and splits things out to into
separate functions. It also attempts to tidy up the calls by wrapping
things in "context"s. There are also attempts to improve logging when
there are errors.

Signed-off-by: Andrew Thornton <art27@cantab.net>

---------

Signed-off-by: Andrew Thornton <art27@cantab.net>
Co-authored-by: techknowlogick <techknowlogick@gitea.io>
Co-authored-by: delvh <dev.lh@web.de>

After #22362, we can feel free to use transactions without
`db.DefaultContext`.

And there are still lots of models using `db.DefaultContext`, I think we
should refactor them carefully and one by one.

Co-authored-by: Lunny Xiao <xiaolunwen@gmail.com>

Change all license headers to comply with REUSE specification.

Fix #16132

Co-authored-by: flynnnnnnnnnn <flynnnnnnnnnn@github>
Co-authored-by: John Olheiser <john.olheiser@gmail.com>

* Move access and repo permission to models/perm/access

* fix test

* fix git test

* Move functions sequence

* Some improvements per @KN4CK3R and @delvh

* Move issues related code to models/issues

* Move some issues related sub package

* Merge

* Fix test

* Fix test

* Fix test

* Fix test

* Rename some files

* Move access and repo permission to models/perm/access

* fix test

* Move some git related files into sub package models/git

* Fix build

* fix git test

* move lfs to sub package

* move more git related functions to models/git

* Move functions sequence

* Some improvements per @KN4CK3R and @delvh

This PR continues the work in #17125 by progressively ensuring that git
commands run within the request context.

This now means that the if there is a git repo already open in the context it will be used instead of reopening it.

Signed-off-by: Andrew Thornton <art27@cantab.net>

* Some refactors related repository model

* Move more methods out of repository

* Move repository into models/repo

* Fix test

* Fix test

* some improvements

* Remove unnecessary function

* Implemented LFS client.

* Implemented scanning for pointer files.

* Implemented downloading of lfs files.

* Moved model-dependent code into services.

* Removed models dependency. Added TryReadPointerFromBuffer.

* Migrated code from service to module.

* Centralised storage creation.

* Removed dependency from models.

* Moved ContentStore into modules.

* Share structs between server and client.

* Moved method to services.

* Implemented lfs download on clone.

* Implemented LFS sync on clone and mirror update.

* Added form fields.

* Updated templates.

* Fixed condition.

* Use alternate endpoint.

* Added missing methods.

* Fixed typo and make linter happy.

* Detached pointer parser from gogit dependency.

* Fixed TestGetLFSRange test.

* Added context to support cancellation.

* Use ReadFull to probably read more data.

* Removed duplicated code from models.

* Moved scan implementation into pointer_scanner_nogogit.

* Changed method name.

* Added comments.

* Added more/specific log/error messages.

* Embedded lfs.Pointer into models.LFSMetaObject.

* Moved code from models to module.

* Moved code from models to module.

* Moved code from models to module.

* Reduced pointer usage.

* Embedded type.

* Use promoted fields.

* Fixed unexpected eof.

* Added unit tests.

* Implemented migration of local file paths.

* Show an error on invalid LFS endpoints.

* Hide settings if not used.

* Added LFS info to mirror struct.

* Fixed comment.

* Check LFS endpoint.

* Manage LFS settings from mirror page.

* Fixed selector.

* Adjusted selector.

* Added more tests.

* Added local filesystem migration test.

* Fixed typo.

* Reset settings.

* Added special windows path handling.

* Added unit test for HTTPClient.

* Added unit test for BasicTransferAdapter.

* Moved into util package.

* Test if LFS endpoint is allowed.

* Added support for git://

* Just use a static placeholder as the displayed url may be invalid.

* Reverted to original code.

* Added "Advanced Settings".

* Updated wording.

* Added discovery info link.

* Implemented suggestion.

* Fixed missing format parameter.

* Added Pointer.IsValid().

* Always remove model on error.

* Added suggestions.

* Use channel instead of array.

* Update routers/repo/migrate.go

* fmt

Signed-off-by: Andrew Thornton <art27@cantab.net>

Co-authored-by: zeripath <art27@cantab.net>

This PR adds basic repository LFS management UI including the ability to find all possible pointers within the repository. Locks are not managed at present but would be addable through some simple additions.

* Add basic repository lfs management
* add auto-associate function
* Add functionality to find commits with this lfs file
* Add link to find commits on the lfs file view
* Adjust commit view to state the likely branch causing the commit
* Only read Oid from database

* extract actions on new pull request from models to pulls service

* improve code

* move code.gitea.io/gitea/modules/pull to code.gitea.io/gitea/services/pull

* fix fmt

* Rename pulls.go to pull.go

No need to convert to the same type.

On merge we walk the merge history and ensure that all lfs objects pointed to in
the history are added to the base repository. This switches from relying on having git-lfs installed on the server, (and in fact .gitattributes being correctly installed.)