Deprecate SafeBufferedOutputStream

Java 8 fixed the silent flush during close issue by
FilterOutputStream (base class of BufferedOutputStream)
using try-with-resources to close the stream, getting a
behavior matching what JGit's SafeBufferedOutputStream
was doing:

  try {
    flush();
  } finally {
    out.close();
  }

With Java 8 as the minimum required version to run JGit
it is no longer necessary to override close() or have
this class. Deprecate the class, and use the JRE's version
of close.

Change-Id: Ic0584c140010278dbe4062df2e71be5df9a797b3

org.eclipse.jgit.junit/src/org/eclipse/jgit/junit/TestRepository.java

@@ -46,6 +46,7 @@ package org.eclipse.jgit.junit;
 import static org.junit.Assert.assertEquals;
 import static org.junit.Assert.fail;
 
+import java.io.BufferedOutputStream;
 import java.io.File;
 import java.io.FileOutputStream;
 import java.io.IOException;
@@ -103,7 +104,6 @@ import org.eclipse.jgit.treewalk.TreeWalk;
 import org.eclipse.jgit.treewalk.filter.PathFilterGroup;
 import org.eclipse.jgit.util.ChangeIdUtil;
 import org.eclipse.jgit.util.FileUtils;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /**
  * Wrapper to make creating test data easier.
@@ -885,14 +885,14 @@ public class TestRepository<R extends Repository> {
 
 				pack = nameFor(odb, name, ".pack");
 				try (OutputStream out =
-						new SafeBufferedOutputStream(new FileOutputStream(pack))) {
+						new BufferedOutputStream(new FileOutputStream(pack))) {
 					pw.writePack(m, m, out);
 				}
 				pack.setReadOnly();
 
 				idx = nameFor(odb, name, ".idx");
 				try (OutputStream out =
-						new SafeBufferedOutputStream(new FileOutputStream(idx))) {
+						new BufferedOutputStream(new FileOutputStream(idx))) {
 					pw.writeIndex(out);
 				}
 				idx.setReadOnly();

org.eclipse.jgit.test/tst/org/eclipse/jgit/diff/DiffFormatterTest.java

@@ -45,6 +45,7 @@ package org.eclipse.jgit.diff;
 
 import static org.junit.Assert.assertEquals;
 
+import java.io.BufferedOutputStream;
 import java.io.ByteArrayOutputStream;
 import java.io.File;
 
@@ -65,7 +66,6 @@ import org.eclipse.jgit.treewalk.filter.PathFilter;
 import org.eclipse.jgit.util.FileUtils;
 import org.eclipse.jgit.util.RawParseUtils;
 import org.eclipse.jgit.util.io.DisabledOutputStream;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 import org.junit.After;
 import org.junit.Before;
 import org.junit.Test;
@@ -381,7 +381,7 @@ public class DiffFormatterTest extends RepositoryTestCase {
 		write(new File(folder, "folder.txt"), "folder");
 		try (Git git = new Git(db);
 				ByteArrayOutputStream os = new ByteArrayOutputStream();
-				DiffFormatter dfmt = new DiffFormatter(new SafeBufferedOutputStream(os))) {
+				DiffFormatter dfmt = new DiffFormatter(new BufferedOutputStream(os))) {
 			git.add().addFilepattern(".").call();
 			git.commit().setMessage("Initial commit").call();
 			write(new File(folder, "folder.txt"), "folder change");
@@ -414,7 +414,7 @@ public class DiffFormatterTest extends RepositoryTestCase {
 		write(new File(folder, "folder.txt"), "folder");
 		try (Git git = new Git(db);
 				ByteArrayOutputStream os = new ByteArrayOutputStream();
-				DiffFormatter dfmt = new DiffFormatter(new SafeBufferedOutputStream(os))) {
+				DiffFormatter dfmt = new DiffFormatter(new BufferedOutputStream(os))) {
 			git.add().addFilepattern(".").call();
 			RevCommit commit = git.commit().setMessage("Initial commit").call();
 			write(new File(folder, "folder.txt"), "folder change");
@@ -446,7 +446,7 @@ public class DiffFormatterTest extends RepositoryTestCase {
 		write(new File(folder, "folder.txt"), "folder");
 		try (Git git = new Git(db);
 				ByteArrayOutputStream os = new ByteArrayOutputStream();
-				DiffFormatter dfmt = new DiffFormatter(new SafeBufferedOutputStream(os));) {
+				DiffFormatter dfmt = new DiffFormatter(new BufferedOutputStream(os));) {
 			git.add().addFilepattern(".").call();
 			RevCommit commit = git.commit().setMessage("Initial commit").call();
 			write(new File(folder, "folder.txt"), "folder change");
@@ -473,7 +473,7 @@ public class DiffFormatterTest extends RepositoryTestCase {
 	@Test
 	public void testDiffNullToNull() throws Exception {
 		try (ByteArrayOutputStream os = new ByteArrayOutputStream();
-				DiffFormatter dfmt = new DiffFormatter(new SafeBufferedOutputStream(os))) {
+				DiffFormatter dfmt = new DiffFormatter(new BufferedOutputStream(os))) {
 			dfmt.setRepository(db);
 			dfmt.format((AnyObjectId) null, null);
 			dfmt.flush();

org.eclipse.jgit.test/tst/org/eclipse/jgit/internal/storage/file/AbbreviationTest.java

@@ -50,6 +50,7 @@ import static org.junit.Assert.assertNotNull;
 import static org.junit.Assert.assertTrue;
 import static org.junit.Assert.fail;
 
+import java.io.BufferedOutputStream;
 import java.io.ByteArrayOutputStream;
 import java.io.File;
 import java.io.FileOutputStream;
@@ -69,7 +70,6 @@ import org.eclipse.jgit.lib.Repository;
 import org.eclipse.jgit.revwalk.RevBlob;
 import org.eclipse.jgit.transport.PackedObjectInfo;
 import org.eclipse.jgit.util.FileUtils;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 import org.junit.After;
 import org.junit.Before;
 import org.junit.Test;
@@ -180,13 +180,10 @@ public class AbbreviationTest extends LocalDiskRepositoryTestCase {
 		File idxFile = new File(packDir, packName + ".idx");
 		File packFile = new File(packDir, packName + ".pack");
 		FileUtils.mkdir(packDir, true);
-		OutputStream dst = new SafeBufferedOutputStream(new FileOutputStream(
-				idxFile));
-		try {
+		try (OutputStream dst = new BufferedOutputStream(
+				new FileOutputStream(idxFile))) {
 			PackIndexWriter writer = new PackIndexWriterV2(dst);
 			writer.write(objects, new byte[OBJECT_ID_LENGTH]);
-		} finally {
-			dst.close();
 		}
 		new FileOutputStream(packFile).close();
 

org.eclipse.jgit.test/tst/org/eclipse/jgit/internal/storage/file/ConcurrentRepackTest.java

@@ -51,6 +51,7 @@ import static org.junit.Assert.assertNotNull;
 import static org.junit.Assert.assertNotSame;
 import static org.junit.Assert.fail;
 
+import java.io.BufferedOutputStream;
 import java.io.File;
 import java.io.FileOutputStream;
 import java.io.IOException;
@@ -71,7 +72,6 @@ import org.eclipse.jgit.revwalk.RevObject;
 import org.eclipse.jgit.revwalk.RevWalk;
 import org.eclipse.jgit.storage.file.WindowCacheConfig;
 import org.eclipse.jgit.util.FileUtils;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 import org.junit.After;
 import org.junit.Before;
 import org.junit.Test;
@@ -235,20 +235,15 @@ public class ConcurrentRepackTest extends RepositoryTestCase {
 			throws IOException {
 		final long begin = files[0].getParentFile().lastModified();
 		NullProgressMonitor m = NullProgressMonitor.INSTANCE;
-		OutputStream out;
 
-		out = new SafeBufferedOutputStream(new FileOutputStream(files[0]));
-		try {
+		try (OutputStream out = new BufferedOutputStream(
+				new FileOutputStream(files[0]))) {
 			pw.writePack(m, m, out);
-		} finally {
-			out.close();
 		}
 
-		out = new SafeBufferedOutputStream(new FileOutputStream(files[1]));
-		try {
+		try (OutputStream out = new BufferedOutputStream(
+				new FileOutputStream(files[1]))) {
 			pw.writeIndex(out);
-		} finally {
-			out.close();
 		}
 
 		touch(begin, files[0].getParentFile());

org.eclipse.jgit/src/org/eclipse/jgit/dircache/DirCache.java

@@ -46,6 +46,7 @@
 package org.eclipse.jgit.dircache;
 
 import java.io.BufferedInputStream;
+import java.io.BufferedOutputStream;
 import java.io.EOFException;
 import java.io.File;
 import java.io.FileInputStream;
@@ -86,7 +87,6 @@ import org.eclipse.jgit.util.IO;
 import org.eclipse.jgit.util.MutableInteger;
 import org.eclipse.jgit.util.NB;
 import org.eclipse.jgit.util.TemporaryBuffer;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /**
  * Support for the Git dircache (aka index file).
@@ -636,7 +636,7 @@ public class DirCache {
 		requireLocked(tmp);
 		try {
 			writeTo(liveFile.getParentFile(),
-					new SafeBufferedOutputStream(tmp.getOutputStream()));
+					new BufferedOutputStream(tmp.getOutputStream()));
 		} catch (IOException err) {
 			tmp.unlock();
 			throw err;

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/file/PackBitmapIndexWriterV1.java

@@ -53,7 +53,6 @@ import java.text.MessageFormat;
 import org.eclipse.jgit.internal.JGitText;
 import org.eclipse.jgit.internal.storage.file.PackBitmapIndexBuilder.StoredEntry;
 import org.eclipse.jgit.lib.Constants;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 import com.googlecode.javaewah.EWAHCompressedBitmap;
 
@@ -74,7 +73,7 @@ public class PackBitmapIndexWriterV1 {
 	 */
 	public PackBitmapIndexWriterV1(final OutputStream dst) {
 		out = new DigestOutputStream(dst instanceof BufferedOutputStream ? dst
-				: new SafeBufferedOutputStream(dst),
+				: new BufferedOutputStream(dst),
 				Constants.newMessageDigest());
 		dataOutput = new SimpleDataOutput(out);
 	}

org.eclipse.jgit/src/org/eclipse/jgit/internal/storage/file/PackIndexWriter.java

@@ -56,7 +56,6 @@ import org.eclipse.jgit.lib.Constants;
 import org.eclipse.jgit.lib.ObjectId;
 import org.eclipse.jgit.transport.PackedObjectInfo;
 import org.eclipse.jgit.util.NB;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /**
  * Creates a table of contents to support random access by {@link PackFile}.
@@ -183,7 +182,7 @@ public abstract class PackIndexWriter {
 	 */
 	protected PackIndexWriter(final OutputStream dst) {
 		out = new DigestOutputStream(dst instanceof BufferedOutputStream ? dst
-				: new SafeBufferedOutputStream(dst),
+				: new BufferedOutputStream(dst),
 				Constants.newMessageDigest());
 		tmp = new byte[4 + Constants.OBJECT_ID_LENGTH];
 	}

org.eclipse.jgit/src/org/eclipse/jgit/lib/RebaseTodoFile.java

@@ -43,6 +43,7 @@
 
 package org.eclipse.jgit.lib;
 
+import java.io.BufferedOutputStream;
 import java.io.File;
 import java.io.FileOutputStream;
 import java.io.IOException;
@@ -53,7 +54,6 @@ import java.util.List;
 import org.eclipse.jgit.lib.RebaseTodoLine.Action;
 import org.eclipse.jgit.util.IO;
 import org.eclipse.jgit.util.RawParseUtils;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /**
  * Offers methods to read and write files formatted like the git-rebase-todo
@@ -216,9 +216,8 @@ public class RebaseTodoFile {
 	 */
 	public void writeRebaseTodoFile(String path, List<RebaseTodoLine> steps,
 			boolean append) throws IOException {
-		OutputStream fw = new SafeBufferedOutputStream(new FileOutputStream(
-				new File(repo.getDirectory(), path), append));
-		try {
+		try (OutputStream fw = new BufferedOutputStream(new FileOutputStream(
+				new File(repo.getDirectory(), path), append))) {
 			StringBuilder sb = new StringBuilder();
 			for (RebaseTodoLine step : steps) {
 				sb.setLength(0);
@@ -234,8 +233,6 @@ public class RebaseTodoFile {
 				sb.append('\n');
 				fw.write(Constants.encode(sb.toString()));
 			}
-		} finally {
-			fw.close();
 		}
 	}
 }

org.eclipse.jgit/src/org/eclipse/jgit/lib/Repository.java

@@ -52,6 +52,7 @@ import java.io.File;
 import java.io.FileNotFoundException;
 import java.io.FileOutputStream;
 import java.io.IOException;
+import java.io.OutputStream;
 import java.net.URISyntaxException;
 import java.text.MessageFormat;
 import java.util.Collection;
@@ -94,7 +95,6 @@ import org.eclipse.jgit.util.FileUtils;
 import org.eclipse.jgit.util.IO;
 import org.eclipse.jgit.util.RawParseUtils;
 import org.eclipse.jgit.util.SystemReader;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
@@ -1799,15 +1799,12 @@ public abstract class Repository implements AutoCloseable {
 			throws FileNotFoundException, IOException {
 		File headsFile = new File(getDirectory(), filename);
 		if (heads != null) {
-			BufferedOutputStream bos = new SafeBufferedOutputStream(
-					new FileOutputStream(headsFile));
-			try {
+			try (OutputStream bos = new BufferedOutputStream(
+					new FileOutputStream(headsFile))) {
 				for (ObjectId id : heads) {
 					id.copyTo(bos);
 					bos.write('\n');
 				}
-			} finally {
-				bos.close();
 			}
 		} else {
 			FileUtils.delete(headsFile, FileUtils.SKIP_MISSING);

org.eclipse.jgit/src/org/eclipse/jgit/transport/DaemonClient.java

@@ -44,6 +44,7 @@
 package org.eclipse.jgit.transport;
 
 import java.io.BufferedInputStream;
+import java.io.BufferedOutputStream;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.OutputStream;
@@ -52,7 +53,6 @@ import java.net.Socket;
 
 import org.eclipse.jgit.transport.resolver.ServiceNotAuthorizedException;
 import org.eclipse.jgit.transport.resolver.ServiceNotEnabledException;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /** Active network client of {@link Daemon}. */
 public class DaemonClient {
@@ -95,7 +95,7 @@ public class DaemonClient {
 	void execute(final Socket sock) throws IOException,
 			ServiceNotEnabledException, ServiceNotAuthorizedException {
 		rawIn = new BufferedInputStream(sock.getInputStream());
-		rawOut = new SafeBufferedOutputStream(sock.getOutputStream());
+		rawOut = new BufferedOutputStream(sock.getOutputStream());
 
 		if (0 < daemon.getTimeout())
 			sock.setSoTimeout(daemon.getTimeout() * 1000);

org.eclipse.jgit/src/org/eclipse/jgit/transport/TransportGitAnon.java

@@ -46,6 +46,7 @@
 package org.eclipse.jgit.transport;
 
 import java.io.BufferedInputStream;
+import java.io.BufferedOutputStream;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.OutputStream;
@@ -62,7 +63,6 @@ import org.eclipse.jgit.errors.NotSupportedException;
 import org.eclipse.jgit.errors.TransportException;
 import org.eclipse.jgit.internal.JGitText;
 import org.eclipse.jgit.lib.Repository;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /**
  * Transport through a git-daemon waiting for anonymous TCP connections.
@@ -182,7 +182,7 @@ class TransportGitAnon extends TcpTransport implements PackTransport {
 				OutputStream sOut = sock.getOutputStream();
 
 				sIn = new BufferedInputStream(sIn);
-				sOut = new SafeBufferedOutputStream(sOut);
+				sOut = new BufferedOutputStream(sOut);
 
 				init(sIn, sOut);
 				service("git-upload-pack", pckOut); //$NON-NLS-1$
@@ -221,7 +221,7 @@ class TransportGitAnon extends TcpTransport implements PackTransport {
 				OutputStream sOut = sock.getOutputStream();
 
 				sIn = new BufferedInputStream(sIn);
-				sOut = new SafeBufferedOutputStream(sOut);
+				sOut = new BufferedOutputStream(sOut);
 
 				init(sIn, sOut);
 				service("git-receive-pack", pckOut); //$NON-NLS-1$

org.eclipse.jgit/src/org/eclipse/jgit/transport/TransportLocal.java

@@ -48,6 +48,7 @@
 package org.eclipse.jgit.transport;
 
 import java.io.BufferedInputStream;
+import java.io.BufferedOutputStream;
 import java.io.File;
 import java.io.IOException;
 import java.io.InputStream;
@@ -67,7 +68,6 @@ import org.eclipse.jgit.transport.resolver.ReceivePackFactory;
 import org.eclipse.jgit.transport.resolver.UploadPackFactory;
 import org.eclipse.jgit.util.FS;
 import org.eclipse.jgit.util.io.MessageWriter;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 import org.eclipse.jgit.util.io.StreamCopyThread;
 
 /**
@@ -258,7 +258,7 @@ class TransportLocal extends Transport implements PackTransport {
 			OutputStream upOut = uploadPack.getOutputStream();
 
 			upIn = new BufferedInputStream(upIn);
-			upOut = new SafeBufferedOutputStream(upOut);
+			upOut = new BufferedOutputStream(upOut);
 
 			init(upIn, upOut);
 			readAdvertisedRefs();
@@ -311,7 +311,7 @@ class TransportLocal extends Transport implements PackTransport {
 			OutputStream rpOut = receivePack.getOutputStream();
 
 			rpIn = new BufferedInputStream(rpIn);
-			rpOut = new SafeBufferedOutputStream(rpOut);
+			rpOut = new BufferedOutputStream(rpOut);
 
 			init(rpIn, rpOut);
 			readAdvertisedRefs();

org.eclipse.jgit/src/org/eclipse/jgit/transport/WalkPushConnection.java

@@ -45,6 +45,7 @@ package org.eclipse.jgit.transport;
 
 import static org.eclipse.jgit.transport.WalkRemoteObjectDatabase.ROOT_DIR;
 
+import java.io.BufferedOutputStream;
 import java.io.IOException;
 import java.io.OutputStream;
 import java.util.ArrayList;
@@ -69,7 +70,6 @@ import org.eclipse.jgit.lib.Ref.Storage;
 import org.eclipse.jgit.lib.RefWriter;
 import org.eclipse.jgit.lib.Repository;
 import org.eclipse.jgit.transport.RemoteRefUpdate.Status;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /**
  * Generic push support for dumb transport protocols.
@@ -262,21 +262,15 @@ class WalkPushConnection extends BaseConnection implements PushConnection {
 			// Write the pack file, then the index, as readers look the
 			// other direction (index, then pack file).
 			//
-			final String wt = "Put " + base.substring(0, 12); //$NON-NLS-1$
-			OutputStream os = dest.writeFile(pathPack, monitor, wt + "..pack"); //$NON-NLS-1$
-			try {
-				os = new SafeBufferedOutputStream(os);
+			String wt = "Put " + base.substring(0, 12); //$NON-NLS-1$
+			try (OutputStream os = new BufferedOutputStream(
+					dest.writeFile(pathPack, monitor, wt + "..pack"))) { //$NON-NLS-1$
 				writer.writePack(monitor, monitor, os);
-			} finally {
-				os.close();
 			}
 
-			os = dest.writeFile(pathIdx, monitor, wt + "..idx"); //$NON-NLS-1$
-			try {
-				os = new SafeBufferedOutputStream(os);
+			try (OutputStream os = new BufferedOutputStream(
+					dest.writeFile(pathIdx, monitor, wt + "..idx"))) { //$NON-NLS-1$
 				writer.writeIndex(os);
-			} finally {
-				os.close();
 			}
 
 			// Record the pack at the start of the pack info list. This

org.eclipse.jgit/src/org/eclipse/jgit/util/TemporaryBuffer.java

@@ -56,7 +56,6 @@ import java.util.ArrayList;
 import org.eclipse.jgit.internal.JGitText;
 import org.eclipse.jgit.lib.NullProgressMonitor;
 import org.eclipse.jgit.lib.ProgressMonitor;
-import org.eclipse.jgit.util.io.SafeBufferedOutputStream;
 
 /**
  * A fully buffered output stream.
@@ -360,7 +359,7 @@ public abstract class TemporaryBuffer extends OutputStream {
 			overflow.write(b.buffer, 0, b.count);
 		blocks = null;
 
-		overflow = new SafeBufferedOutputStream(overflow, Block.SZ);
+		overflow = new BufferedOutputStream(overflow, Block.SZ);
 		overflow.write(last.buffer, 0, last.count);
 	}
 

org.eclipse.jgit/src/org/eclipse/jgit/util/io/SafeBufferedOutputStream.java

@@ -43,20 +43,13 @@
 package org.eclipse.jgit.util.io;
 
 import java.io.BufferedOutputStream;
-import java.io.IOException;
 import java.io.OutputStream;
 
 /**
- * A BufferedOutputStream that throws an error if the final flush fails on
- * close.
- * <p>
- * Java's BufferedOutputStream swallows errors that occur when the output stream
- * tries to write the final bytes to the output during close. This may result in
- * corrupted files without notice.
- * </p>
+ * @deprecated use BufferedOutputStream in Java 8 and later.
  */
+@Deprecated
 public class SafeBufferedOutputStream extends BufferedOutputStream {
-
 	/**
 	 * @see BufferedOutputStream#BufferedOutputStream(OutputStream)
 	 * @param out
@@ -76,13 +69,4 @@ public class SafeBufferedOutputStream extends BufferedOutputStream {
 	public SafeBufferedOutputStream(OutputStream out, int size) {
 		super(out, size);
 	}
-
-	@Override
-	public void close() throws IOException {
-		try {
-			flush();
-		} finally {
-			super.close();
-		}
-	}
 }