* FS: Open TemporaryBuffer in try-with-resource
* EditListTest: Open InputStream in try-with-resource
* EGitPatchHistoryTest: Open BufferedReader in try-with-resource
* T0003_BasicTest: Use CommitBuilder.setEncoding(Charset)
* WalkEncryptionTest: Use StandardCharsets.UTF_8
* GetTextTest: Use StandardCharsets constants instead of CharSet.forName
* EGitPatchHistoryTest: Set input stream encoding with constant
* DirCacheIterator: Open InputStream in try-with-resource
* DumbClientSmartServerTest: Open auto-closeable resources in try-with-resource
* DirCacheCheckoutTest: Open FileInputStream in try-with-resource
* DiffFormatterReflowTest: Open InputStream in try-with-resource

* AdvertiseErrorTest: Open Transport in try-with-resource
* AddCommandTest: Open PrintWriter in try-with-resource
* FileBasedConfigTest: Open FileOutputStream in try-with-resource
* WalkRemoteObjectDatabase: Open auto-closeable resources in try-with-resource
* TransportSftp: Open BufferedReader in try-with-resource
* ReflogReaderTest: Open FileOutputStream in try-with-resource
* ReflogReaderTest: Fix indentation
* ReflogWriterTest: Open FileInputStream in try-with-resource
* TransportHttp: Open auto-closeable resources in try-with-resource
* RebaseCommandTest: Open BufferedReader in try-with-resource
* DirCacheCGitCompatabilityTest: Open BufferedReader in try-with-resource
* LockFile: Open FileInputStream in try-with-resource
* CheckoutCommandTest: Open FileInputStream in try-with-resource
* SmudgeFilter: Fix Integer boxing warning
* Add ConfigConstants.CONFIG_SECTION_LFS

* ConfigTest: Add some additional comment parsing tests
* Config: Drop backslash in invalid escape sequences in subsections
* Config: Match C git behavior more closely in escaping values

* Add some tests for alternates

* bazel: Consume hamcrest through transitive dependency

* Make streamFileThreshold configurable

* ObjectChecker: honor some git-core fsck.* options
* ObjectChecker: allow some objects to skip errors

* Delete deprecated TemporaryBuffer.LocalFile constructors
* Delete deprecated FileUtils.setExecute(File, boolean)
* Delete deprecated WorkingTreeIterator.isModified(DirCacheEntry, boolean)
* Delete deprecated UploadPackMayNotContinueException
* Delete deprecated TransferConfig.isFsckObjects()
* Delete deprecated TextBuiltin.out
* Delete deprecated Merger.getBaseCommit()

* Improve exception thrown when pull can't find advertised ref
* Silence unchecked conversion warning in TransportSftp
* Silence deprecation warning in WindowCacheConfig
* Silence deprecation warning in DirCacheCheckout
* Fix hidden field warnings in bundle org.eclipse.jgit

* Fix PackWriterBitmapWalker handling non-existing uninteresting objects

* Merger: clarify getBaseCommit javadoc
* Reuse Merger's ObjectReader from ResolveMerger

* Add support for pull with --rebase and --no-rebase

* DfsBlockCache: Update hits to not include contains()
* Add a listener for changes to a DfsObjDatabase's pack files
* Expose the reverse index size in the DfsPackDescription
* Add a DfsPackFile method to get the number of cached bytes
* Expose the list of pack files in the DfsBlockCache
* Add a DFS repository description and reference it in each pack
* Clarify the docstring of DfsBlockCache.reconfigure()
* DFS: A storage layer for JGit