core.autorlf defaults to false, but can be set in the user or
"system" config files. Note that EGit/JGit may not know
where the "system" config file is located.
Also fix pgm's ConfigTest which depends on default repository
configuration.
Bug: 382067
Change-Id: I2c698a76e30d968e7f351b4f5a2195f0b124f62f
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Only increment mod count if packed-refs file changes
Previously if a packed-refs file was racily clean then there
was a 2.5 second window in which each call to getPackedRefs
would increment the mod count causing a RefsChangedEvent to be
fired since the FileSnapshot would report the file as modified.
If a RefsChangedListener called getRef/getRefs from the
onRefsChanged method then a StackOverflowError could occur
since the stack could be exhausted before the 2.5 second
window expired and the packed-refs file would no longer
report being modified.
Now a SHA-1 is computed of the packed-refs file and the
mod count is only incremented when the packed refs are
successfully set and the id of the new packed-refs file
does not match the id of the old packed-refs file.
Change-Id: I8cab6e5929479ed748812b8598c7628370e79697
Smudge index entries on first write (too), as well when reading
That happens when the index and a new file is created within the same
second and becomes a problem if we then modify the newly created file
within the same second after adding it to the index. Without smudging
JGit will, on later reads, think the file is unchanged.
The accompanying test passed with the smuding on read.
Change-Id: I4dfecf5c93993ef690e7f0dddb3f3e6125daae15
Change-Id: I0a86ce0e393dfde9bb27f0b29e036e76c856396e
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Signed-off-by: Chris Aniszczyk <zx@twitter.com>
Use Integer, Character, and Long valueOf methods when
passing parameters to MessageFormat and other places
that expect objects instead of primitives
Change-Id: I5942fbdbca6a378136c00d951ce61167f2366ca4
Parsing the size from a packed object header was incorrectly computing
the total inflated length when the length exceeded the range of a Java
int. The next 7 bits of size information was shifted left as an int
using a shift of 25 bits, placing the higher bits of the size into the
sign position. When this size was extended to a long to be added to
the current size accumulator the size went negative, resulting in
NegativeArraySizeException being thrown.
Fix all places where this particular pattern of code is used to read a
pack size field, or a binary delta header, as they both use the same
variable length encoding scheme.
Change-Id: I04008728ed828f18202652c3d5401cf95a441d0a
This extracts the logic for writing to the reflog from
RefDirectory into a new ReflogWriter class. This class
creates a public API for writing reflog entries similar
to ReflogReader for reading reflog entries.
The new command supports rewriting the stash's log to remove
a configured entry followed by updating the stash ref to
the value at the bottom of the newly written log.
Change-Id: Icfcbc70e838666769a742a94196eb8dc9c7efcc7
Signed-off-by: Chris Aniszczyk <zx@twitter.com>
This allows repositoryies with a missing repositoryformatversion
config value to be successfully opened but still throws exceptions
when the value is a non-long or greater than zero.
git-core attempts to parse this config value as a long as well
and defaults to 0 if the value is missing.
Bug: 368697
Change-Id: I4a93117afca37e591e8e0ab4d2f2eef4273f0cc9
Signed-off-by: Chris Aniszczyk <zx@twitter.com>
Pass a DfsRepositoryDescription to InMemoryRepository
This was likely intended originally, but this class had never been
used, so the mistake went unnoticed.
Change-Id: I5e0e9f22ebf707c11d0581511c7a56b182188f77
This reverts commit 88fe2836ed.
Auto CRLF isn't special enough to be screwing around with the buffers
used for raw byte processing of the ObjectInserter API. If it needs a
buffer to process a file that is bigger than the buffer allocated by
an ObjectInserter, it needs to do its own buffer management.
Change-Id: Ida4aaa80d0f9f78035f3d2a9ebdde904c980f89a
CRLF only works for small files, where small is the size of the
buffer, i.e. about 8K. This QD fix reallocates the buffer to be
large enough.
Bug: 369780
Change-Id: Ifc34ad204fbf5986b257a5c616e4a8c601e8261a
Make sure all bytes are written to files on close, or get an error.
Java's BufferedOutputStream swallows any errors that occur when flushing
the buffer in close().
This class overrides close to make sure an error during the final
flush is reported back to the caller.
Change-Id: I74a82b31505fadf8378069c5f6554f1033c28f9b
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
This patch introduces CRLF handling to the DirCacheCheckout and
WorkingTreeIterator supporting the AutoCRLF for add, checkout
reset and status and hopefully some other places that depende
on the underlying logic of the affected API's.
The patch includes test cases for the Status command provided by
Tomasz Zarna for bug 353867.
The core.eol and core.safecrlf options are not yet supported.
Bug: 301775
Bug: 353867
Change-Id: I2280a2dc0698829475de6a662a6c6e80b1df7663
This will allow recovery from a LockFailedException where
the file associated with an exception is passed to FileUtils.unlock
to attempt an unlock on the file so the operation can be retried
Change-Id: I580166d386126bfb54a318a65253070a6e325936
This will allows calling classes to handle lock failures
without checking against the message and will also provide
access to the file that could not be locked.
Change-Id: I95bc59e1330a7af71ae3b0485c4516299193f504
Once a pack has been committed with commitPack(), we know that the pack
list has changed but we don't re-scan the underlying storage.
Change-Id: Ia7b35df4442a5f5dfe7e817edcc77b44b5410d08
Fix duplicate objects in "thin+cached" packs from DFS
The DfsReader must offer every representation of an object that
exists on the local repository when PackWriter asks for them. This
is necessary to identify objects in the thin pack part that are also
in the cached pack that will be appended onto the end of the stream.
Without looking at all alternatives, PackWriter may pack the same
object twice (once in the thin section, again in the cached base
pack). This may cause the command line C version to go into an
infinite loop when repacking the resulting repository, as it may see
a delta chain cycle with one of those duplicate copies of the object.
Previously the DfsReader tried to avoid looking at packs that it
might not care about, but this is insufficient, as all versions
must be considered during pack generation.
Change-Id: Ibf4a3e8ea5c42aef16404ffc42a5781edd97b18e
Consider two objects A->B where A uses B as a delta base, and these
are in the same source pack file ordered as "A B".
If cached packs is enabled and B is also in the cached pack that
will be appended onto the end of the thin pack, and both A, B are
supposed to be in the thin pack, PackWriter must consider the fact
that A's base B is an edge object that claims to be part of the
new pack, but is actually "external" and cannot be written first.
If the object reuse system considered B candidates fist this bug
does not arise, as B will be marked as edge due to it existing in
the cached pack. When the A candidates are later examined, A sees a
valid delta base is available as an edge, and will not later try to
"write base first" during the writing phase.
However, when the reuse system considers A candidates first they
see that B will be in the outgoing pack, as it is still part of
the thin pack, and arrange for A to be written first. Later when A
switches from being in-pack to being an edge object (as it is part
of the cached pack) the pointer in B does not get its type changed
from ObjectToPack to ObjectId, so B thinks A is non-edge.
We work around this case by also checking that the delta base B
is non-edge before writing the object to the pack. Later when A
writes its object header, delta base B's ObjectToPack will have
an offset == 0, which makes isWritten() = false, and the OBJ_REF
delta format will be used for A's header. This will be resolved by
the client to the copy of B that appears in the later cached pack.
Change-Id: Ifab6bfdf3c0aa93649468f49bcf91d67f90362ca
Packs can contain up to 2^32-1 objects, which exceeds the range of a
Java int. Try harder to accept higher object counts in some cases by
using long more often when we are working with the object count value.
This is a trivial refactoring, we may have to make even more changes
to the object handling code to support more than 2^31-1 objects.
Change-Id: I8cd8146e97cd1c738ad5b48fa9e33804982167e7
Annotated tags are relatively rare and currently are scheduled in a
pack file near the commits, decreasing the time it takes to resolve
client requests reading tags as part of a history traversal.
Putting them first before the commits allows the storage system to
page in the tag area, and have it relatively hot in the LRU when
the nearby commit area gets examined too. Later looking at the
tree and blob data will pollute the cache, making it more likely
the tags are not loaded and would require file IO.
Change-Id: I425f1f63ef937b8447c396939222ea20fdda290f
Correct progress monitor on "Getting sizes:" phase
This counter always was running 1 higher, because it incremented
after the queue was exhausted (and every object was processed). Move
increments to be after the queue has provided a result, to ensure
we do not show a higher in-progress count than total count.
Change-Id: I97f815a0492c0957300475af409b6c6260008463
Make the code more clear with a simple refactoring of the boolean
logic into a method that describes the condition we are looking
for on each pack file. A cached pack is possible if there exists
a tips collection, and the collection is non-empty.
Change-Id: I4ac42b0622b39d159a0f4f223e291c35c71f672c
Keep track of a static collection of all PackWriter instances
Stored in a weak concurrent hash map, which we clean up while iterating.
Usually the weak reference behavior should not be necessary because
PackWriters should be released with release(), but we still want to
avoid leaks when dealing with broken client code.
Change-Id: I337abb952ac6524f7f920fedf04065edf84d01d2
Estimate the amount of memory used by a PackWriter
Memory usage is dominated by three terms:
- The maximum memory allocated to each delta window.
- The maximum size of a single file held in memory during delta search.
- ObjectToPack instances owned by the writer.
For the first two terms, rather than doing complex instrumentation of
the DeltaWindows, we just overestimate based on the config parameters
(though we may underestimate if the maximum size is not set).
For the ObjectToPack instances, we do some rough byte accounting of the
underlying Java object representation.
Change-Id: I23fe3cf9d260a91f1aeb6ea22d75af8ddb9b1939
Add an object encapsulating the state of a PackWriter
Exposes essentially the same state machine to the programmer as is
exposed to the client via a ProgressMonitor, using a wrapper around
beginTask()/endTask().
Change-Id: Ic3622b4acea65d2b9b3551c668806981fa7293e3
Always use try/finally around DfsBlockCache.clockLock
Any RuntimeException or Error in this block will leave the lock
held by the caller thread, which can later result in deadlock or
just cache requests hanging forever because they cannot get to
the lock object.
Wrap everything in try/finally to prevent the lock from hanging,
even though a RuntimeException or Error should never happen in
any of these code paths.
Change-Id: Ibb3467f7ee4c06f617b737858b4be17b10d936e0
The cache starts with a single empty Ref that has no data, as the
clock list does not support being empty. When this Ref is removed,
the size has to be decremented from the associated DfsPackKey,
which was previously null. Make it always be non-null.
Change-Id: I2af99903e8039405ea6d67f383576ffa43839cff
Add a listener for changes to a DfsObjDatabase's pack files
Intended for cross-request use, so only refers to
DfsRepositoryDescriptions rather than DfsRepositorys.
Change-Id: I2633e472c9264d91d632069f608d53d4bdd0fc09
Expose the list of pack files in the DfsBlockCache
Callers may want to inspect the contents of the cache, which this allows
them to do in a read-only fashion without any locking.
Change-Id: Ifd78e8ce34e26e5cc33e9dd61d70c593ce479ee0
Add a DFS repository description and reference it in each pack
Just as DfsPackDescription describes a pack but does not imply it is
open in memory, a DfsRepositoryDescription describes a repository at a
basic level without it necessarily being open.
Change-Id: I890b5fccdda12c1090cfabf4083b5c0e98d717f6
Clarify the docstring of DfsBlockCache.reconfigure()
The docstring was copied from the local filesystem cache code, which
actually attempted to reconfigure the cache on the fly. The DFS cache is
designed to be "reconfigured" exactly once.
Change-Id: Ia0b01f5d6b6b3d3a68d65a5c229ff67c1cede5bc
In practice the DHT storage layer has not been performing as well as
large scale server environments want to see from a Git server.
The performance of the DHT schema degrades rapidly as small changes
are pushed into the repository due to the chunk size being less than
1/3 of the pushed pack size. Small chunks cause poor prefetch
performance during reading, and require significantly longer prefetch
lists inside of the chunk meta field to work around the small size.
The DHT code is very complex (>17,000 lines of code) and is very
sensitive to the underlying database round-trip time, as well as the
way objects were written into the pack stream that was chunked and
stored on the database. A poor pack layout (from any version of C Git
prior to Junio reworking it) can cause the DHT code to be unable to
enumerate the objects of the linux-2.6 repository in a completable
time scale.
Performing a clone from a DHT stored repository of 2 million objects
takes 2 million row lookups in the DHT to locate the OBJECT_INDEX row
for each object being cloned. This is very difficult for some DHTs to
scale, even at 5000 rows/second the lookup stage alone takes 6 minutes
(on local filesystem, this is almost too fast to bother measuring).
Some servers like Apache Cassandra just fall over and cannot complete
the 2 million lookups in rapid fire.
On a ~400 MiB repository, the DHT schema has an extra 25 MiB of
redundant data that gets downloaded to the JGit process, and that is
before you consider the cost of the OBJECT_INDEX table also being
fully loaded, which is at least 223 MiB of data for the linux kernel
repository. In the DHT schema answering a `git clone` of the ~400 MiB
linux kernel needs to load 248 MiB of "index" data from the DHT, in
addition to the ~400 MiB of pack data that gets sent to the client.
This is 193 MiB more data to be accessed than the native filesystem
format, but it needs to come over a much smaller pipe (local Ethernet
typically) than the local SATA disk drive.
I also never got around to writing the "repack" support for the DHT
schema, as it turns out to be fairly complex to safely repack data in
the repository while also trying to minimize the amount of changes
made to the database, due to very common limitations on database
mutation rates..
This new DFS storage layer fixes a lot of those issues by taking the
simple approach for storing relatively standard Git pack and index
files on an abstract filesystem. Packs are accessed by an in-process
buffer cache, similar to the WindowCache used by the local filesystem
storage layer. Unlike the local file IO, there are some assumptions
that the storage system has relatively high latency and no concept of
"file handles". Instead it looks at the file more like HTTP byte range
requests, where a read channel is a simply a thunk to trigger a read
request over the network.
The DFS code in this change is still abstract, it does not store on
any particular filesystem, but is fairly well suited to the Amazon S3
or Apache Hadoop HDFS. Storing packs directly on HDFS rather than
HBase removes a layer of abstraction, as most HBase row reads turn
into an HDFS read.
Most of the DFS code in this change was blatently copied from the
local filesystem code. Most parts should be refactored to be shared
between the two storage systems, but right now I am hesistent to do
this due to how well tuned the local filesystem code currently is.
Change-Id: Iec524abdf172e9ec5485d6c88ca6512cd8a6eafb
Since we replaced GitIndex by DirCache JGit didn't fire
IndexChangedEvents anymore. For EGit this still worked with a high
latency since its RepositoryChangeScanner which is scheduled to
run each 10 seconds fires the event in case the index changes.
This scanner is meant to detect index changes induced by a different
process e.g. by calling "git add" from native git.
When the index is changed from within the same process we should fire
the event synchronously. Compare the index checksum on write to index
checksum when index was read earlier to determine if index really
changed. Use IndexChangedListener interface to keep DirCache decoupled
from Repository.
Change-Id: Id4311f7a7859ffe8738863b3d86c83c8b5f513af
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
We can detect index changes using FileSnapshot. This is more efficient
and removes usage of a deprecated class.
Change-Id: I4a679102c9a1bd8e82b9ca93eb9dbbde445e9be4
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Export the shallow pack information, and also a handy function to
sum up the total times. Include the time writing out the index file,
if it was created.
Change-Id: I7f60ae6848455a357b25feedb23743bbf6c153cf
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>
Add a helper for parsing branch switch info out of a reflog entry
Change-Id: I91c7e08c4afd2562df2226887a933d93c78a0371
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
JGit currently identifies loose objects as 'corrupt' if they've been
deflated using a window size less than 32Kb, because the
isStandardFormat() function doesn't recognise the header
byte as a zlib header. This patch makes the method tolerant of
all valid window sizes (15-bit to 8-bit) - but doesn't sacrifice
it's accuracy in distingushing the standard loose-object format
from the experimental (now abandoned) format. It's based on a patch
which has been merged into C-Git master branch:
https://github.com/git/git/commit/7f684a2aff636f44a506
On memory constrained systems zlib may use a much smaller window
size - working on Agit, I found that Android uses a 4KB window;
giving a header byte of 0x48, not 0x78. Consequently all loose
objects generated by the Android platform appear 'corrupt' :(
It might appear that this patch changes isStandardFormat() to the
point where it could incorrectly identify the experimental format as
the standard one, but the two criteria (bitmask & checksum) can only
give a false result for an experimental object where both of the
following are true:
1) object size is exactly 8 bytes when uncompressed (bitmask)
2) [single-byte in-pack git type&size header] * 256
+ [1st byte of the following zlib header] % 31 = 0 (checksum)
As it happens, for all possible combinations of valid object type
(1-4) and window bits (0-7), the only time when the checksum will be
divisible by 31 is for 0x1838 - ie object type *1*, a Commit - which,
due the fields all Commit objects must contain, could never be as
small as 8 bytes in size.
Given this, the combination of the two criteria (bitmask & checksum)
always correctly determines the buffer format, and is more tolerant
than the previous version.
References:
Android uses a 4KB window for deflation:
http://android.git.kernel.org/?p=platform/libcore.git;a=blob;f=luni/src/main/native/java_util_zip_Deflater.cpp;h=c0b2feff196e63a7b85d97cf9ae5bb2583409c28;hb=refs/heads/gingerbread#l53
Code snippet searching for false positives with the zlib checksum:
https://gist.github.com/1118177
Change-Id: Ifd84cd2bd6b46f087c9984fb4cbd8309f483dec0
This implements the server side of shallow clones only (i.e.
git-upload-pack), not the client side.
CQ: 5517
Bug: 301627
Change-Id: Ied5f501f9c8d1fe90ab2ba44fac5fa67ed0035a4
Signed-off-by: Chris Aniszczyk <caniszczyk@gmail.com>
Robin Rosenberg
Kevin Sawicki
Matthias Sohn
Shawn O. Pearce
Dave Borowitz
Tomasz Zarna
Colby Ranger
Roberto Tyley
Matt Fischer