* DiffFormatter: correctly deal with tracked files in ignored folders

* JGit pgm: Format blame output to match canonical git
* Make blame work correctly on merge conflicts

* Externalize error message in ReftableWriter#throwIllegalEntry
* Merge branch 'stable-5.4'

* Merge branch 'stable-4.9' into stable-4.10

* Fix GC to delete empty fanout directories after repacking

* Fix detection of "initial checkout"

* Merge branch 'stable-5.0' into stable-5.1

* Merge branch 'stable-4.7' into stable-4.8

* Fix javadoc in org.eclipse.jgit.http.test
* Fix javadoc in org.eclipse.jgit.http.server
* Fix javadoc in org.eclipse.jgit.http.apache
* Fix javadoc in org.eclipse.jgit.archive
* Fix javadoc in org.eclipse.jgit.ant

* InvalidLongObjectIdException: Fix formatting of message

* FsckPackParser: Fix warning about int being boxed to Integer

* Merge branch 'stable-4.6' into stable-4.7

* Rename extensions.refsStorage to refStorage

* RepositoryCacheTest: avoid to close already closed repository

* Unconditionally close repositories in RepositoryCache.clear()

* Add $NON-NLS to suppress "Non-externalized string literal" warnings

* RepoCommandTest: Improve assertion message for remote branch recording

* Remove repository from cache when it's closed
* Fix RefDirectory not closing resources
* Fix repository cache never closing repository

* NoteMapTest: Open TreeWalk instances in try-with-resource
* ObjectDirectoryTest: Fix warnings about variable hiding
* PackWriterTest: Open RevWalk in try-with-resource
* PatchIdDiffFormatterTest: Open Git and PatchIdDiffFormatter in try-with-resource
* PathSuffixFilterTest: Open TreeWalk in try-with-resource
* PostOrderTreeWalkTest: Open TreeWalk in try-with-resource
* PullCommandWithRebaseTest: Open RevWalk in try-with-resource
* PushCommandTest: Open Git instances in try-with-resource
* RacyGitTests: Open NameConflictTreeWalk in try-with-resource
* RecursiveMergerTest: Open TreeWalk and BufferedReader in try-with-resource
* ReflogConfigTest: refactor commit method to avoid variable hiding
* Update .mailmap
* RefDirectoryTest: Fix warning about member variable hiding
* ReflogResolveTest: Open Git instances in try-with-resource
* ReflogTest: Open Git instances in try-with-resource
* RepoCommandTest: Open Git instances in try-with-resource

* Add support for HEAD requests to HttpClientConnection
* Allow to reuse disableSslVerify method, move it to HttpSupport
* Support LFS protocol and a file system based LFS storage
* Add com.google.gson 2.2.4.v201311231704 to target platform
* Implement SHA-256 abstraction

* Fix encoding problem from curl repostory on github

* Callback in PackWriter & BundleWriter.

* Expose disposeBody() on RevCommit and RevTag
* ObjectReader: remove the walkAdvice API
* RevWalk: Discard uninteresting commits unless RevSort.BOUNDARY
* ObjectWalk: make setRetainBody(false) the default

* Delete deprecated PackWriter.preparePack() methods
* Delete deprecated class IgnoreRule
* Delete deprecated checkoutEntry() methods in DirCacheCheckout

* Support the new repository layout for submodules
* Allow explicit configuration of git directory in CloneCommand
* Allow explicit configuration of git directory in InitCommand

* Add new method IndexDiff#getPathsWithIndexMode

* Mention null return in Javadoc of Config#getString

* Break up GCTest to run in parallel
* Modify T0004_PackReaderTest to use existing pack
* Move SampleDataRepositoryTestCase to org.eclipse.jgit.test
* Support running from JARs in JGitTestUtil

* Retain file length and mod time when doing a mixed reset

* JGit 1.3.0.201202121842-rc4

* Add detection of untracked folders to IndexDiffFilter

* Revert "PackWriter: Do not delta compress already packed objects"
* Speed up ObjectWalk by 6235 objects/sec