Without this check, the checkout was done but the result was a "both
deleted" status when inspecting it with C Git.

Found this while working on bug 390147.

Change-Id: Ic3693f2c651827239e838bf7f37da842a7ae9707

Clarify expiration of objects with the modification time exactly at the
given time instant.

Change-Id: I2000aec89c8d6a95700380b0a32275d2d658f67e
Signed-off-by: Sasa Zivkov <sasa.zivkov@sap.com>

resolve("foo~X") where X is greater than the distance from foo to the
root should return null, but 2a2362fb introduced a bug causing it to
either return resolve("foo") or NPE. Add a test for the correct
behavior.

Also add an analogous test for foo^X where X is greater than the
number of parents (which was not broken by that commit).

Change-Id: Ic580081ece57c8c2df29b652897b425ecb34e11f

For configuration parameter like "gc.pruneexpire" we need to understand
the value "never". Never is handled as a date so far into the future
that it will never happen. The actual value currently used is the
constant GitDateParser.NEVER.

Change-Id: I7744eaee9bf5026da517151c212c88325c348d6c
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>

Instead of just returning null when something was not parseable we
should throw a real ParseException. This allows us to distinguish
between specifications which are unparseable and those which represent
no date (e.g. "never")

Change-Id: Ib3c1aa64b65ed0e0270791a365f2fa72ab78a3f4

Make GC honor the config parameter gc.pruneexpire. If the parameter is
not set then the default is "2.weeks.ago"

Change-Id: I0ae0ca85993cafb4bc75ba80504da18544894ec3

Change-Id: Id5b578f7040c6c896ab9386a6b5ed62b0f495ed5
Signed-off-by: Sasa Zivkov <sasa.zivkov@sap.com>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

The underlying problem is that System.out is a PrintWriter and
as such it does not throw exceptions on error, but rather just
sets a flag and continues.

This changes replaces the use of System.out with a PrintWriter-like
writer that does not catch error, but instead throw them to the
caller.

Bug: 366243
Change-Id: I44405edc4416e943b87f09a0f6ed041c6c51b046

ResolveMerger throws a MissingObjectException when it encounters
a submodule conflict while merging. The reason is that it treats
the submodule link as a blob and tries to read its contents.

We solve the issue by detecting before content merge whether the
path to be merged is a submodule link, and skip the content
merge if it is.

Bug: 389238
Change-Id: I9a58dfc7716b28a21f5c04cf3a865091ae8dfe7e
Signed-off-by: Tommi Siivola <tommi.siivola@eficode.com>

The value of -1 is the default value used by the underlying http
transports provided by the jre. On some versions an attempt to
set the timeout explicitly to -1 triggers a check condition,
disallowing negative numbers.

Bug: 389003
Change-Id: I74a22f8edc6c8e15843ad07c96a137739d9dcad1
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

This methods is for finding branches only.

Change-Id: Ic68b5295ff814401890f0592ae95851554706ca6

None of these should have been exposed to base classes. The majority
of them are private implementation details that are not required by a
subclass in order to interact with the base protocol definition. The
few that are needed should be visible as accessor methods, so the
internals can be modified without breaking the public JGit API.

Change-Id: I874179105c9c37703307facbbf99387c52bf772c
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

This flag was added to provide an unsafe operation on the local
repository because the storage.dht code was too damn slow to provide
proper safe Git behavior all of the time. Now that stoarge.dht has
been removed from the repository, also delete this unsafe flag to
prevent applications from misusing the JGit library and permitting
users to potentially damage their local repository with bad data
received from an untrusted peer.

Change-Id: Ib1861c48bb74836731e7b7d57b635dd654b0dc66
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Change-Id: I9829950b686ce3b8c70b8f7a1774d5e2b55cd00a
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

When a file is not in the index and neither contents nor mode differ
between "head" and "merge", the index state should be kept. If they
differ, a checkout conflict should occur. This is described in Git's
git-read-tree.txt.

JGit used to replace the index state with "merge" in both of the above
cases.

A confusing effect of this was that when one removed a file and then did
a rebase, the file silently reappeared again.

The changes to dir/file conflict handling are a consequence of this
change, as the index handling change made tests in DirCacheCheckoutTest
break. I compared these cases to C Git and the new behavior there also
matches what C Git does.

Bug: 387390
Change-Id: I5beb781f12172a68f98c67d4c8029eb51ceae62d
Signed-off-by: Robin Stocker <robin@nibor.org>

The transformation is the same as AutoCRLFOutputStream does, but
the direction is reversed. The tests are reused, but the implementation
derives somewhat from the EolCanonicalizingInputStream.

This stream will be used to compare blobs with LF line endings with
worktree data that has CRLF line endings.

Bug: 387501
Change-Id: I80d96e453e7f780dd464a89778de124cf35384e1
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

The statistics for a repo now expose how many bytes are used in the
filesystem to store all loose/packed objects. The number of packed/loose
refs are also exposed.

Change-Id: I335a4c7630a2629a86f13a2a5cd99f79a2c2afa4

In order to parse user specified strings containing date and time info
a thread-safe parser is implemented. This is needed for example to
interpret configuration parameters (e.g. gc.pruneexpire where need to
parse strings like "2 weeks ago"). The parser is thread-safe by caching
SimpleDateFormat instances in a ThreadLocal cache.

Native git has a parser called approxidate which is able to interpret a
huge number of formats ("1 year ago", "tea time", ...). Ideally JGit
should be able to parse the same strings as native git but for now this
parser understands the following subset:

"now"
"yesterday"
"(x) years|months|weeks|days|hours|minutes|seconds ago"
"yyyy-MM-dd HH:mm:ss Z" (ISO)
"EEE, dd MMM yyyy HH:mm:ss Z" (RFC)
"yyyy-MM-dd"
"yyyy.MM.dd"
"MM/dd/yyyy"
"dd.MM.yyyy"
"EEE MMM dd HH:mm:ss yyyy Z" (DEFAULT)
"EEE MMM dd HH:mm:ss yyyy" (LOCAL)

Change-Id: Iccb66dadb60da13104e73140e53d5e2de068369c

EGit should be able to continue a rebase started by C Git.

Change-Id: I63058026295fec34157b5687ae87ae9cb0c27c86
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Change-Id: I8dcdf0b83e91e6132dc490e8ec53818220773c94
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Change-Id: Id0b8aef92f10572d4f1ec198e0281162fcd7ed4e

Java has no option but to use precomposed Unicode, so we should
state that when creating a new repository. Not that Java will use
precomposed unicode regardless of this setting, but this reduces
the risk of incompatibility with C Git.

Change-Id: I3779b75f76d2e2061c836cbc9b4b7c2ae0cf18f4

Change-Id: I34e9ba4a26f7af5b88140c070f02a7990f1941af

JGit was not able to lookup refs which had the name of files which exist
in the .git folder. When JGit was looking up a ref named X it has a
fixed set of directories where it searched for files named X
(ignore packed refs for now). First directory to search for is .git. In
case of the ref named 'config' it searched there for this file, found it
(it's the .git/config file with the repo configuration in it), parsed
it, found it is an invalid ref and stopped searching. It never looked
for a file .git/refs/heads/config.

I changed JGit in a way that when it finds a file in GIT_DIR which
corresponds to a ref name and if this file doesn't contain a valid ref
then it will ignore the InvalidObjectIdException and continue searching.

Change-Id: Ic26a329fb1624a5b2b2494c78bac4bd76817c100
Bug: 381574
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>
Signed-off-by: Stefan Lay <stefan.lay@sap.com>

The method uses some heuristics to obtain much better performance
than isMergeBase.

Since I wrote the relevant code in the method I approve the license
change from EPL to EDL implied by the move.

Change-Id: Ic4a7584811a2b0bf24e4f6b3eab2a7c022eabee8
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>

EGit wasn't able to decorate local branches tracking another local
branch with number of commits the checked out local branch differs from
the other local branch it's tracking.

Bug: 376970 
Change-Id: I74e932d5eacd74dbf6b0dffcfc65ba3222a8250e
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

On conflicts in rebase or cherry-pick, the conflict markers were like
this:

    <<<<<<< OURS
    a
    =======
    b
    >>>>>>> THEIRS

This is technically correct, but it could be better.

It's especially confusing during a rebase, where the meaning of
OURS/THEIRS is not obvious. The intuition is that "ours" is the commits
that "I" did before the rebase, but it's the other way around because of
the way rebase works. See various bug reports and stackoverflow
discussions.

With this change, in the case of a cherry-pick while on master, the
markers will be like this:

    <<<<<<< master
    a
    =======
    b
    >>>>>>> bad1dea Message of the commit I'm cherry-picking

In the case of a "git rebase master":

    <<<<<<< Upstream, based on master
    a
    =======
    b
    >>>>>>> b161dea Message of a commit I'm rebasing

It's not "master" because that would only be correct for the first
cherry-pick during a rebase, after that, it's master + already
cherry-picked commits.

And in the case of a "git pull --rebase":

    <<<<<<< Upstream, based on branch 'master' of git@example.org:repo
    a
    =======
    b
    >>>>>>> b161dea Message of a commit I'm rebasing

Bug: 336819
Change-Id: I1333a8dd170bb0077f491962013485efb6f2a926
Signed-off-by: Robin Stocker <robin@nibor.org>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

The file location of the constructor for BlameGenerator
did not specify where the path should be relative from.

Fix BlameGenerator comments based on suggestions by Robin Stocker.

Change-Id: I3d79db2d2ba4961835fe664ae6178e0bfc97b910

Change-Id: I829bb135b2347f79aa6d8979a0934042e40d212f

idOffset is not zero when idBuffer comes from blob in the dircache

Change-Id: Iff768422cba140a5d6a776e2c627b852f079c1da

In DFS, everything is stored in a pack but only objects in a pack with
source GC or UNREACHABLE_GARBAGE have had delta compression attempted.
Expose the PackSource setter and getter on DfsPackDescription in order
to implement wasDeltaAttempted.

Change-Id: Ie949f321147ad870f1c3f23b552343bbbda32152

If an object is in a pack file already, delta compression will not
attempt to re-compress it. This assumes that the previous
packing already performed the optimal compression attempt, however,
the subclasses of StoredObjectRepresentation may use other heuristics
to determine if the stored format is optimal.

Change-Id: I403de522f4b0dd2667d54f6faed621f392c07786

This change makes CheckoutCommand pass the list of modified files
through the OK result, enabling outside world to react in a smaller
scope (for example refresh only resources containing the modified
files).

Change-Id: I53c50ee09bc0d3ff501bdc25196e52e739c3f1f9
Signed-off-by: Chris Aniszczyk <zx@twitter.com>

C Git prefixes the time stamp in the author script with a "@"

Change-Id: I140b29519acc101da78296eef562368fc6b61135

Change-Id: I03f59d07bcc3338ef8d392cbd940799186ca03bd
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>

Since git doesn't keep track of empty directories, they should be
created first. Test case included demonstrates that using
StashApplyCommand(). Bugfix is applied to the DirCacheCheckout class,
because StashApplyCommand() uses it internally to apply a stash.

Change-Id: Iac259229ef919f9e92e7e51a671d877172bb88a8
Signed-off-by: Jevgeni Zelenkov <jevgeni.zelenkov@gmail.com>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

JGit allows to create commits which have duplicate parents: e.g. a
commit X has first parent Y and second parent Y. Such commits are not
handled correctly by PlotCommit leading to wrong display of the history
in EGit. In such cases there is a never ending passing line drawn beside
all commits younger than the commit with duplicate parents. This commit
fixes this by explicitly checking for duplicate parents.

In a different commit we should fix JGit not to create commits with
duplicate parents. I think native git also doesn't allow such commits,
although history display in native git (gitk, git log --graph) is not
damaged by such commits.

Change-Id: Ie3019ef613a507023958bea27b1badc3b8950279

Implements a garbage collector for FileRepositories. Main ideas are
copied from the garbage collector for DFS based repos
(DfsGarbageCollector). Added functionalities are
- pruning loose objects
- handling of the index
- packing refs
- handling of reflogs (objects referenced from reflog will not be
pruned/)

These are features of a GC which are not handled in this change and
which should come with subsequent changes:
- unpacking packed objects into loose objects (to support that pruning
packed objects doesn't delete them until they are older than two weeks)
- expiration of reflogs
- support for configuration parameters (e.g. gc.pruneExpire)

Change-Id: I14ea5cb7e0fd1b5c50b994fd77f4e05bfbb9d911
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>

Expose class DfsReader and method DfsPackFile.hasObject() as public.
Applications may want to be able to inquire about some details of
the storage of a repository. Make this possible by exposing some
simple accessor methods.

Expose method DfsObjDatabase.clearCache() as protected, allowing
implementing subclasses to dump the cache if necessary, and force
it to reload on a future request.

Change-Id: Ic592c82d45ace9f2fa5f8d7e4bacfdce96dea969

A configured remote url like "../repo" works with C Git.

In JGit, it only worked if Java's current working directory happened to
be the local repository working directory.

Change-Id: I33ba3f81b37d03cf17ca7ae25a90774a27e7e02b
Signed-off-by: Robin Stocker <robin@nibor.org>

Currently, after a merge/cherry-pick/rebase, all index entries are
smudged as the ResolveMerger never sets entry lengths and/or
modification times. This change teaches it to re-set them at least for
things it did not touch. The other entries are then repaired when the
index is persisted, or entries are checked out.

The first attempt to get this in was commit
3ea694c252 which has been reverted.
Since then some fixes to ResolveMerger and a few more tests have
been added which check situations where the index is not matching
HEAD before we merge.

Change-Id: I648fda30846615b3bf688c34274c6cf4bc857832
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>
Also-by: Markus Duft <markus.duft@salomon.at>

This reverts commit 3ea694c252

Merges with unmodified subtrees are broken with this commit present.
Back it out until a fixed version can be supplied.

Resolves into a ref name corresponding to the named (or current)
branch's upstream ref.

Change-Id: I98df46cedb498724cf14343fbb168f24ff667929

Repository.resolve can only return an ObjectId and will
continue to do so, but another method, simplify(), will
be able to return a branch name for some cases.

Previous checkouts can be specified as @{-n}, where n is an
integer speifying the n:th previous branch. The result
is the branch name, unless the checkout was a detached head,
in which case the object id is returned. Since the result
is a branch it may be followed by a references to the reflog,
such as @{-1}@{1} if necessary.

A simple expression like "master" is resolved to master in
simplify, but anything starting with refs gets resolved to
its object id, even if it is a branch.

A symbolic ref is resolved to its leaf ref, e.g. "HEAD" might
be resolved to "master".

Change-Id: Ifb815a1247ba2a3e2d9c46249c09be9d47f2b693

Currently, after a merge/cherry-pick/rebase, all index entries are
smudged as the ResolveMerger never sets entry lengths and/or
modification times. This change teaches it to re-set them at least for
things it did not touch. The other entries are then repaired when the
index is persisted, or entries are checked out.

Change-Id: I0944f2017483d32043d0d09409b13055b5609a4b
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>

No branch before @ is interpreted as the currently checked out branch.
For detached heads it would be HEAD, but normally it is the branch
that HEAD refers to.

Change-Id: I051a1724fa390b8212e8986ba832b1347a20371e

Otherwise applying will fail with a FileNotFoundException, because
File.createNewFile() fails with missing parents.

Contains change & according test.

Change-Id: I970522b549b8bb260ca6720da11f12c57ee8a492
Signed-off-by: Chris Aniszczyk <zx@twitter.com>

This is to prepare for extension. The new names better reflect
the content of the variables.

Change-Id: Ic2b4741ab33223aa7f239915d9138b254890bf7b

Do this by using one of the two references that are dependent
of checkReferencedIsReachable.

Change-Id: I4f16916c62ed8ea434013925f49fb03fe57b7d7e

An example where this is necessary is when a whole directory was deleted
and checkout is used to restore a file which was in that directory.

Bug: 372133
Change-Id: I1d45e0a5d2525fe1fdfbf08c9c5c166dd909e9fd
Signed-off-by: Robin Stocker <robin@nibor.org>