Overload DirCache.lock to take a repository that is
used for updating smudged index entries with information
from the repository's working tree.

New unit tests are also added for updating smudged index
entries on reset, checkout, and commit.

Change-Id: I88689f26000e4e57e77931e5ace7c804d92af1b6

That happens when the index and a new file is created within the same
second and becomes a problem if we then modify the newly created file
within the same second after adding it to the index. Without smudging
JGit will, on later reads, think the file is unchanged.

The accompanying test passed with the smuding on read.

Change-Id: I4dfecf5c93993ef690e7f0dddb3f3e6125daae15

Use Integer, Character, and Long valueOf methods when
passing parameters to MessageFormat and other places
that expect objects instead of primitives

Change-Id: I5942fbdbca6a378136c00d951ce61167f2366ca4

Change-Id: I763590a45d75f00a09097ab6f89581a3bbd3c797

Java's BufferedOutputStream swallows any errors that occur when flushing
the buffer in close().

This class overrides close to make sure an error during the final
flush is reported back to the caller.

Change-Id: I74a82b31505fadf8378069c5f6554f1033c28f9b
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

This will allows calling classes to handle lock failures
without checking against the message and will also provide
access to the file that could not be locked.

Change-Id: I95bc59e1330a7af71ae3b0485c4516299193f504

Since we replaced GitIndex by DirCache JGit didn't fire
IndexChangedEvents anymore. For EGit this still worked with a high
latency since its RepositoryChangeScanner which is scheduled to
run each 10 seconds fires the event in case the index changes.
This scanner is meant to detect index changes induced by a different
process e.g. by calling "git add" from native git.

When the index is changed from within the same process we should fire
the event synchronously. Compare the index checksum on write to index
checksum when index was read earlier to determine if index really
changed. Use IndexChangedListener interface to keep DirCache decoupled
from Repository.

Change-Id: Id4311f7a7859ffe8738863b3d86c83c8b5f513af
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Change-Id: I0bea130df611de3ef8c9251093b11c62b5442cd1

Change I61a1b45db2d60fdcc0f87373ac6fd75ac4c4a202 fixed a possible NPE
occurring for newly created repositories - but in that case a wrong
value (false = not modified) was returned.

If a current version of the index file exists (liveFile), but there is
no snapshot, this means that there have been modifications (i.e. true
has to be returned).

Change-Id: I698f78112249f9924860fc58eb7eab7afdf87eb7
Signed-off-by: Philipp Thun <philipp.thun@sap.com>

The snapshot field of a DirCache object for a newly created repository
can be null. This fix prevents a NPE when isModified() is called in
such a situation.

Change-Id: I61a1b45db2d60fdcc0f87373ac6fd75ac4c4a202
Signed-off-by: Philipp Thun <philipp.thun@sap.com>

During unit tests and most likely elsewhere, updates come too fast for
a simple timestamp comparison (with one seconds resolution) to work.
I.e. DirCache thinks it hasn't changed. 

Use FileSnapshot instead which has more advanced logic.

Change-Id: Ib850f84398ef7d4b8a8a6f5a0ae6963e37f2b470
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>

isOutdated returns true iff the memory state differs from the index
file.

Change-Id: If35db06743f5f588ab19d360fd2a18a07c918edb
Signed-off-by: Jens Baumgart <jens.baumgart@sap.com>

Extended flags are processed and available via DirCacheEntry's
new isSkipWorkTree() and isIntentToAdd() methods.  "resolve-undo"
information is completely ignored since its an optional extension.

Change-Id: Ie6e9c6784c9f265ca3c013c6dc0e6bd29d3b7233

Change-Id: Ifc2e9047a45d57829fce59c66618e5de9120a5bb
Signed-off-by: Benjamin Muskalla <bmuskalla@eclipsesource.com>

LockFile.commit fails if another thread concurrently reads
the base file. The problem is fixed by retrying the rename
operation if it fails.

Change-Id: I6bb76ea7f2e6e90e3ddc45f9dd4d69bd1b6fa1eb
Bug: 308506
Signed-off-by: Jens Baumgart <jens.baumgart@sap.com>

Instead of creating the DirCache from a static factory method, use
an instance method on Repository, permitting the implementation to
override the method with a completely different type of DirCache
reading and writing.  This would better support a repository in the
cloud strategy, or even just an in-memory unit test environment.

Change-Id: I6399894b12d6480c4b3ac84d10775dfd1b8d13e7
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

Using a custom exception type makes it easire for an application
developer to understand why an exception was thrown out of a method
we declare.  To remain compatiable with existing callers, we still
extend off IllegalStateException.

Change-Id: Ideeef2399b11ca460a2dbb3cd80eb76aa0a025ba
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

This move isolates all of the local file specific implementation code
into a single package, where their package-private methods and support
classes are properly hidden away from the rest of the core library.

Because of the sheer number of files impacted, I have limited this
change to only the renames and the updated imports.

Change-Id: Icca4884e1a418f83f8b617d0c4c78b73d8a4bd17
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

Some newer style APIs are updated to use the newer ObjectInserter
interface instead of the now deprecated ObjectWriter.  In many of
the unit tests we don't bother to release the inserter, these are
typically using the file backend which doesn't need a release,
but in the future should use an in-memory HashMap based store,
which really wouldn't need it either.

Change-Id: I91a15e1dc42da68e6715397814e30fbd87fa2e73
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

When reading or locking the index of a repository, we need to use
the index file specified by the repository, to ensure we correctly
honor what the repository was configured with.

Change-Id: I5be366ce32d7923b888dc01d19335912b01b7c4c
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

The strings are externalized into the root resource bundles.
The resource bundles are stored under the new "resources" source
folder to get proper maven build.

Strings from tests are, in general, not externalized. Only in
cases where it was necessary to make the test pass the strings
were externalized. This was typically necessary in cases where
e.getMessage() was used in assert and the exception message was
slightly changed due to reuse of the externalized strings.

Change-Id: Ic0f29c80b9a54fcec8320d8539a3e112852a1f7b
Signed-off-by: Sasa Zivkov <sasa.zivkov@sap.com>

The repository state tells in which state the repo is and also which actions
are currently allowed. The state MERGING is telling that a commit is not
possible. But this is only true in the case of unmerged paths in the index.
When we are merging but have resolved all conflicts then we are in a special
state: We are still merging (means the next commit should have multiple
parents) but a commit is now allowed.

Since the MERGING state "canCommit()" cannot be enhanced to return true/false
based on the index state (MERGING is an enum value which does not have a
reference to the repository its state it is representing) I had to introduce a new
state MERGING_RESOLVED. This new state will report that a commit is possible.

CAUTION: there might be the chance that users of jgit previously blindly did a
plain commit (with only one parent) when the RepositoryState allowed them to
do so. With this change these users will now be confronted with a RepositoryState
which says a commit is possible but before they can commit they'll have to
check the MERGE_MESSAGE and MERGE_HEAD files and use the info from these
files.

Change-Id: I0a885e2fe8c85049fb23722351ab89cf2c81a431
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

We didn't skip the correct number of bytes when we skipped over an
unrecognized but optional dircache extension.  We missed skipping
the 8 byte header that makes up the extension's name and length.

We also didn't include the skipped extension's payload as part of
our index checksum, resuting in a checksum failure when the index
was done reading.  So ensure we always scan through a skipped
section and include it in the checksum computation.

Add a test case for a currently unsupported index extension, 'ZZZZ',
to verify we can still read the DirCache object even though we
don't know what 'ZZZZ' is supposed to mean.

Bug: 301287
Change-Id: I4bdde94576fffe826d0782483fd98cab1ea628fa
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

Later we are going to add support for smart HTTP, which requires us to
buffer at least some of the request created by a client before we ship
it to the server.  For many requests, we can fit it completely into a
1 MiB buffer, but if it doesn't we can drop back to using the chunked
transfer encoding to send an unknown stream length.

Rather than recoding the block based memory buffer, we refactor the
local file overflow strategy into a subclass, allowing the HTTP client
code to replace this portion of the logic with its own approach to
start the chunked encoding request.

Change-Id: Iac61ea1017b14e0ad3c4425efc3d75718b71bb8e
Signed-off-by: Shawn O. Pearce <sop@google.com>

According the javadoc, and implied by the name of the class, NB
is about network byte order. The purpose of moving the IO only,
and non-byte order related functions to another class is to
make it easier for new contributors to understand that they
can use these functions in general and it's also makes it easier
to understand where to put new IO related utility functions

Change-Id: I4a9f6b39d5564bc8a694b366e7ff3cc758c5181b
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

Per CQ 3448 this is the initial contribution of the JGit project
to eclipse.org.  It is derived from the historical JGit repository
at commit 3a2dd9921c.

Signed-off-by: Shawn O. Pearce <spearce@spearce.org>