* Remove null access warning in DirCacheCheckout

* Include eclipse.inf

* Allow to get end-of-line characters for a RawText

* Load .gitmodules config before adding values to it

* Exclude org.eclipse.jgit from pack200 packing

* Reuse existing modes and ids

* Fix a typo referring to RevFilter as RefFilter
* Execute ReceiveCommands via a method rather than in ReceivePack
* Modify refs in UploadPack/ReceivePack using a hook interface
* Remove PreUploadHook.onPreAdvertiseRefs
* Add an AdvertiseRefsHookChain, similar to the other hook chains
* Allow creating ReceiveCommands with a specified type
* Expose an OutputStream from ReceivePack for sending client messages
* Minor javadoc wording fixes in ReceivePack
* Extract filterCommands as a static method on ReceiveCommand

* Add command support for applying a stashed commit

* Add support for creating a stashed commit

* Add all paths option to CheckoutCommand

* Let the date formatter pick the locale.

* Add support for autosetuprebase to the CloneCommand

* Add IGNORE_ERRORS to FileUtils.delete()

* Prepare 2.0.0-SNAPSHOT builds

* Merge branch 'stable-1.3'

* Prepare post 1.3.0.201202151440-r build

* JGit 1.3.0.201202151440-r

* Generate conflicts and index updates on file mode changes

* Merge branch 'stable-1.3'

* Prepare post 1.3.0.201202121842-rc4 builds

* JGit 1.3.0.201202121842-rc4

* Support gitdir references in working tree .git file

* Support committing submodule updates

* Add getters for old and new prefixes in DiffFormatter

* Update iplog tool's README

* Add developers section to root POM file

* Allow to list tags with org.eclipse.jgit.pgm.Tag

* Move writeTrashFile and deleteFile into JGitTestUtil

* Add scm section to root POM file

* Really close output stream when core.autocrlf is true

* Workaround incompatible refactoring in Jetty 7.6.0

* Add command support for listing stashed commits

* Support relative submodule URLs on init/add/sync

* Add BranchTrackingStatus for getting remote tracking status

* Add BranchConfig helper for access to branch config section

* Add RevWalkUtils with count(start, end) method

* Support more of AutoCRLF

* Fix resolution of tree when path is empty

* Make sure all bytes are written to files on close, or get an error.

* Resolve ~ with no trailing number as the first parent commit

* Throw API exception when LsRemoteCommand fails with TransportException

* Cannot commit -o file with only file permission change

* Provide helper for unlocking a file

* Add setter for ProgressMonitor to DiffCommand

* Add options for setting context lines and prefixes to DiffCommand

* Add helper for determining if status is clean

* Narrow exceptions declared by LsRemoteCommand

* Retain executable mode of existing files on Windows

* Use constants from ConfigConstants in CoreConfig

* Provide file mode of paths in index from IndexDiff