Bug: 548682
Change-Id: I48840d3a68cf1db92c056d218a0d5ed0b9ea4c45
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

It seems on cygwin creating a file under a writable directory can fail
with AccessDeniedException. Log a warning in this case and fallback to
worst case timestamp resolution of 2 seconds.

Bug: 548648
Change-Id: Ic50c31ce9dc9ccadd4db5247df929418ac62d45c
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Checking lastModified is time critical hence debug trace is the only way
to analyze issues since debugging is impractical.

Also add configuration for buffering of log4j output to reduce runtime
impact when debug trace is on. Limit buffer to 1MiB and comment this
configuration out since we may not always want to use buffering.

Change-Id: Ib1a0537b67c8dc3fac994a77b42badd974ce6c97
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Use options
- StandardOpenOption.CREATE to create touched file if not existing
- StandardOpenOption.SYNC to enforce synch of data and meta data changes
- StandardOpenOption.WRITE

Also set mtime explicitly in FileUtils#touch to the current system time.
This should fix that the previous implementation didn't work on
- locally cached Windows network share (CSC-CACHE filesystem) mapped as
a drive
- nfsv4 mounts on Linux
and that it didn't create unborn file like Linux command "touch".
Apache common's and Guava's touch() use the same approach.

Immediately after creating the probe file used to measure timestamp
resolution touch it. This ensures we always use the local system clock
when measuring filesystem timestamp resolution. This should prevent that
clock skew could influence the measured timestamp resolution in case of
a mounted network filesystem.

Bug: 548598
Change-Id: Iaeaf5967963f582395a195aa637b8188bfadac60
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

To enable persisting filesystem timestamp resolution per FileStore add a
new config section to the user global git configuration:

- Config section is "filesystem"
- Config subsection is concatenation of
  - Java vendor (system property "java.vm.vendor")
  - runtime version (system property "java.vm.version")
  - FileStore's name
  - separated by '|'
  e.g.
    "AdoptOpenJDK|1.8.0_212-b03|/dev/disk1s1"
  The prefix is needed since some Java versions do not expose the full
  timestamp resolution of the underlying filesystem. This may also
  depend on the underlying operating system hence concrete key values
  may not be portable.
- Config key for timestamp resolution is "timestampResolution" as a time
  value, supported time units are those supported by
  DefaultTypedConfigGetter#getTimeUnit

If timestamp resolution is already configured for a given FileStore
the configured value is used instead of measuring the resolution.

When timestamp resolution was measured it is persisted in the user
global git configuration.

Example:

[filesystem "AdoptOpenJDK|1.8.0_212-b03|/dev/disk1s1"]
	timestampResolution = 1 seconds

If locking the git config file fails retry saving the resolution up to 5
times in order to workaround races with another thread.

In order to avoid stack overflow use the fallback filesystem timestamp
resolution when loading FileBasedConfig which creates itself a
FileSnapshot to help checking if the config changed.

Note:
- on some OSes Java 8,9 truncate to milliseconds or seconds, see
https://bugs.openjdk.java.net/browse/JDK-8177809, fixed in Java 10
- UnixFileAttributes up to Java 12 truncates timestamp resolution to
microseconds when converting the internal representation to FileTime
exposed in the API, see https://bugs.openjdk.java.net/browse/JDK-8181493
- WindowsFileAttributes also provides only microsecond resolution up to
Java 12

Hence do not attempt to manually configure a higher timestamp resolution
than supported by the Java version being used at runtime.

Bug: 546891
Bug: 548188
Change-Id: Iff91b8f9e6e5e2295e1463f87c8e95edf4abbcf8
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Use a Consumer instead of several nullable variables to further
configure UploadPack. This is in preparation for a test in a subsequent
patch needing further customization of the UploadPack object before
invoking it.

Change-Id: I074dff92c711a5ba74558bb4b06c42c115fb9b7f
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>

Allow the client to specify "sideband-all" in a fetch v2 request,
indicating that the whole response is to be multiplexed (with a sideband
indicator on every non-flush and non-delim pkt) instead of only the
packfile being multiplexed. This allows, for example, progress messages
to be sent at any point in the response.

This implements the "sideband-all" feature documented in
Documentation/technical/protocol-v2.txt in Git.

Change-Id: I3e7f21c88ff0982b1b7ebb09c9ad6c742c4483c8
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>

It is difficult to track what's happening with the pckOut instance
field, so replace it with a local variable in #upload instead.

Change-Id: Ibd9225b28334b7133eccdc6d82b26fc96cbde299
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>

UploadPackTest.java contains tests that check behavior when
"allowfilter" and "allowrefinwant" are not set, are set, and are not set
but the client insists on using them anyway. Because another capability
is to be included in a subsequent patch, refactor the common code in
these tests.

Remove setBoolean calls with "false", as they are no-ops.

Also take the opportunity to eliminate the overspecification of the
"fetch=" line returned by the capability advertisement.

Change-Id: I289bbd11c902a513cd8d53bc34767e61ebbd5f17
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>

EolRepositoryTest and GcCommitSelectionTest timed out frequently when
running unit tests using bazel with the default timeout "moderate"
(300s). Increase timeout of these tests to "long" (900s).

Change-Id: I43588cf950f55b50f868d9fe9c66d22bd428a54c
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

This change is fixing confusing name warning: [1].

  ./org.eclipse.jgit.test/tests.bzl:12: confusing-name:
  Never use 'l', 'I', or 'O' as names (they're too easily confused
  with 'I', 'l', or '0').

And is also fixing: "All calls to rules or macros should pass arguments
by keyword position argument" warning: [2].

  ./org.eclipse.jgit.test/BUILD:42: positional-args: All calls to rules
  or macros should pass arguments by keyword (arg_name=value) syntax.

[1] https://github.com/bazelbuild/buildtools/blob/master/WARNINGS.md#confusing-name
[2] https://github.com/bazelbuild/buildtools/blob/master/WARNINGS.md#positional-args

Change-Id: If5c28ec8a1ddc1d1b1035bd07b838a2a564aea4f
Signed-off-by: David Ostrovsky <david@ostrovsky.org>

This is needed to make build tool chain compatible with the latest
Bazel releases.

Change-Id: I9822b5fe5f934457e6069217d687b3cf4764b7b7
Signed-off-by: David Ostrovsky <david@ostrovsky.org>

Dependencies on commons-compress, xz, and jgit-archive are required
for the build to succeed.

Change-Id: I42f3721078a240ad93b8dcab909e66b9bfff0b56
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>

FileTreeIteratorWithTimeControl was deleted in a024759, but was
not removed from the BUILD file, thus causing the bazel build to
fail.

Change-Id: I892c0ffcac947298d0d6009374ee2c5d9afefb66
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>

Change-Id: Ie2e207eb05e0f6da8018153f8a5dd636e8f35f4c
Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>

The proxy handler may be re-set from an unspecified I/O thread.
Declare the shared variable as volatile.

Change-Id: I4e7ce393ae2cdc7f1cd4edf40c137da6d6c50ad5
Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>

RFC 4253 section 4.2 allows an ssh server to send additional lines
before its server identification string. Apache MINA sshd enforces
for these lines the constraints specified for the server identification
line, too: no NUL characters and not longer than 255 characters. That
is too strict. RFC 4253 doesn't mandate this, and it also doesn't
make sense given the rationale for these lines in RFC 4253: a TCP
wrapper may not be aware of SSH restrictions, and may not adhere to
these constraints.

Be more lenient when parsing the server's protocol version. Allow
NULs and longer lines in the preamble, and also handle line endings
more leniently. Only enforce the restrictions for the actual server
identification line.

Bug: 545939
Change-Id: I75955e9d8a8daef7c04fc0f39539c2ee93514e1c
Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>

Use brackets in all "if" statements and remove the "final" from local
variables and method arguments.

https://wiki.eclipse.org/EGit/Contributor_Guide#Coding_standards

Change-Id: I185f3112848fc1218cd7adb9828488f03fa4ddfc
Signed-off-by: Ivan Frade <ifrade@google.com>

Change-Id: I0a5828438810dd23790cba52d7ae2e055c6a3fc9
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

In order to avoid blocking on the main thread during measurement
interactive applications like EGit may want to measure the filesystem
timestamp resolution asynchronously.

In order to enable measurement in the background call
FileStoreAttributeCache.setAsyncfileStoreAttrCache(true)
before the first access to cached FileStore attributes.

Bug: 548188
Change-Id: I8c9a2dbfc3f1d33441edea18b90e36b1dc0156c7
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

The only usage of this test iterator was removed in df637928d. Hence
delete this iterator and associated test.

Change-Id: I47710133ec3edc675c21db210960c024982668c6
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Add a unittest.

In commit I5485db55 ("Fix FileSnapshot's consideration of file size"),
the special casing of UNKNOWN_SIZE was forgotten.

This change, together with I493f3b57b ("Measure file timestamp
resolution used in FileSnapshot") introduced a regression that would
occasionally surface in Gerrit integration tests marked UseLocalDisk,
with the symptom that creating the Admin user in NoteDb failed with a
LOCK_FAILURE.

Signed-off-by: Han-Wen Nienhuys <hanwen@google.com>
Change-Id: I7ffd972581f815c144f810481103c7985af5feb0

Change-Id: I225e04aefd02e56a62e16f3db53fdda77d5e7253
Signed-off-by: Michael Keppler <Michael.Keppler@gmx.de>

Fixes PDE API checks complaining: the methods were added
in JGit 5.5.0.

Change-Id: I9ff860c3408c6bb3891fa0da7547394d0fe9d0b6
Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>

It was reported that measuring file timestamp resolution may hang
indefinitely on nfs. Hence timeout this measurement at the known worst
filesystem timestamp resolution (FAT) of 2 seconds.

Bug: 548188
Change-Id: I17004b0aa49d5b0e76360a008af3adb911b289c0
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

This test case assumed file system timestamp resolution of 1 second. On
filesystems with a finer resolution this test fails since the index
entry is only smudged if the file index entry's lastModified and the
lastModified of the git index itself are within the same filesystem
timer tick. Fix this by ensuring that these timestamps are identical
which should work for any filesystem timer resolution.

Bug: 548188
Change-Id: Id84d59e1cfeb48fa008f8f27f2f892c4f73985de
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>

All other exceptions are handled in a wrapped sendPack method.
Consolidate the error handling code.

Change-Id: Ieac0ce64960534d009d1e6b025130b021b744794
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>

By doing this, exceptions thrown by sendPack are also covered by the
same code.

Change-Id: I3509f2d832af1410f307e931577e4d07e32b014e
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>

When another exception is thrown while handling another exception, that
exception can be attached to the original exception since Java 7
(Throwable#getSuppressed). Attach the secondary exception to the
original exception instead of throwing it away.

Change-Id: Ia093b8207714f2638e0343bc45a83d4342947505
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>

This is a new assertion that will be introduced in JUnit 4.13. Unlike
ExpectedException rule, this makes it easy to test other aspects of the
thrown exception, such like ServiceMayNotContinueException's status
code. Introduce this as before making changes to UploadPackTest more.

Change-Id: Ied7b3071ffcd0e93eece35b01e0abc5ff65645f2
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>

RevWalk does not currently provide a --first-parent equivalent and the
feature has been requested.

Add a field to the RevWalk class to specify whether walks should
traverse first parents only. Modify Generator implementations to support
the feature.

Change-Id: I4a9a0d5767f82141dcf6d08659d7cb77c585fae4
Signed-off-by: Dave Borowitz <dborowitz@google.com>
Signed-off-by: Alex Spradlin <alexaspradlin@google.com>

If a client clones with "--filter=blob:none", the checkout that "git
clone" automatically does causes the client to fetch all blobs at HEAD.
When fetching from a non-bitmapped repository, this will fail if an
object walk is ever needed, because JGit currently rejects such requests
- see the commit message of d3021788d2 ("Use bitmaps for non-commit
reachability checks", 2017-11-10) for more information.

Rejecting such requests in the absence of bitmaps is probably
overzealous: it is true that the server would prefer to have bitmaps in
this case, but there might be a small proportion of repos (for example,
very small repos or newly created ones) that do not have bitmaps, yet
the server would still like to have partial clones for them.

So, allow such requests, performing the object walk reachability check
if necessary. Limit this to servers with "uploadpack.allowFilter"
configured, so that servers wanting to support partial clone have this
functionality, and servers that do not support partial clone do not have
to pay the object walk reachability check cost.

Change-Id: I51964bafec68696a799625d627615b4f45ddbbbf
Signed-off-by: Jonathan Tan <jonathantanmy@google.com>

Error Prone reports:

  [ClassNewInstance] Class.newInstance() bypasses exception checking;
  prefer getDeclaredConstructor().newInstance()

  See https://errorprone.info/bugpattern/ClassNewInstance

This was the only occurrence of the warning in the code base; now it's
fixed, increase the severity to ERROR to prevent future occurrences.

Change-Id: Ic04d1c5d2bd458bbb4bb399d6ce9d147bd48d0b1
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>

The placeholders in manifest and plugin.properties did not match. To
avoid similar issues, all placeholders have been changed to
Bundle-Vendor and Bundle-Name now.

Bug:548503
Change-Id: Ibd4b9bc237b323e614506b97e5fbc99416365040
Signed-off-by: Michael Keppler <Michael.Keppler@gmx.de>

Change-Id: Ib63310a603ba432e65d0c46e4b6b8d440ca6a115
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>

The deleted code is not required as removed files are deleted correctly in
doCheckout() anyway.

The deleted code failed in case a non-empty directory had to be deleted.
file.delete() returned false, triggering an exception.

Bug: 479266
Change-Id: I011bb3882ff0c35b238aa3eccad7889041210277
Signed-off-by: René Scheibe <rene.scheibe@gmail.com>

Creating a folder failed in case a file with the same name already
existed.

Bug: 479266
Change-Id: Ia987660ec0968ad4081dbd5a60e80660539497e3
Signed-off-by: René Scheibe <rene.scheibe@gmail.com>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

By using File#setLastModified, we can create a racy git situation
stably.

Tested with --runs_per_test=100

Bug: 526111
Change-Id: I60b3632d353e19f335668325aa603640be423f58
Signed-off-by: Masaya Suzuki <masayasuzuki@google.com>

Change-Id: I621ba174235a6fb56236e54d24bce704bb5afb28
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>

Archives created by the ArchiveCommand didn't produce deterministic
archive hashes. For RevCommits RevWalk.parseTree returns the root tree
instead of the RevCommit hence retrieving the commit's timestamp didn't
work. Instead use RevWalk.parseAny and extract the tree manually.

Archive entries store timestamps with 1 second resolution hence we need
to wait longer when creating the same archive twice and compare archive
hashes. Otherwise hash comparison in tests wouldn't fail without this
patch.

Bug: 548312
Change-Id: I437d515de51cf68265584d28a8446cebe6341b79
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

update Maven plugins
- ecj to 3.17.0
- error_prone_core to 2.3.3
- plexus-compiler-eclipse to 2.8.5
- plexus-compiler-javac to 2.8.5
- plexus-compiler-javac-errorprone to 2.8.5

Change-Id: I51ecb44538915ed84db041510562394bce977a3e
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

update Maven plugins
- jacoco-maven-plugin to 0.8.4
- japicmp-maven-plugin to 0.14.1
- maven-compiler-plugin to 3.8.1
- maven-deploy-plugin to 3.0.0-M1
- maven-enforcer-plugin to 3.0.0-M2
- maven-install-plugin to 3.0.0-M1
- maven-jar-plugin to 3.1.2
- maven-javadoc-plugin to 3.1.0
- maven-jxr-plugin to 3.0.0
- maven-pmd-plugin to 3.12.0
- maven-resources-plugin to 3.1.0
- maven-shade-plugin to 3.2.1
- maven-source-plugin to 3.1.0
- maven-surefire-plugin to 3.0.0-M3
- spotbugs-maven-plugin to 3.1.12
- tycho to 1.3.0
- tycho-pack200a-plugin to 1.3.0
- tycho-pack200b-plugin to 1.3.0

Cleanup Maven warnings
- pin version of all used Maven plugins
- remove deprecated way to declare minimum Maven version

Change-Id: If23e2e2bb03e5e1e7b1eb9d4924a8faa0aa3704e
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

This change is fixing confusing name warning: [1].

  ./org.eclipse.jgit.test/tests.bzl:12: confusing-name:
  Never use 'l', 'I', or 'O' as names (they're too easily confused
  with 'I', 'l', or '0').

And is also fixing: "All calls to rules or macros should pass arguments
by keyword position argument" warning: [2].

  ./org.eclipse.jgit.test/BUILD:42: positional-args: All calls to rules
  or macros should pass arguments by keyword (arg_name=value) syntax.

[1] https://github.com/bazelbuild/buildtools/blob/master/WARNINGS.md#confusing-name
[2] https://github.com/bazelbuild/buildtools/blob/master/WARNINGS.md#positional-args

Change-Id: If5c28ec8a1ddc1d1b1035bd07b838a2a564aea4f
Signed-off-by: David Ostrovsky <david@ostrovsky.org>

This is needed to make build tool chain compatible with the latest
Bazel releases.

Change-Id: I9822b5fe5f934457e6069217d687b3cf4764b7b7
Signed-off-by: David Ostrovsky <david@ostrovsky.org>

This update is required for Java 11.

Update
- org.mockito to 2.23.0.v20190527-1420
- net.bytebuddy.byte-buddy to 1.9.0.v20181107-1410
- net.bytebuddy.byte-buddy-agent to 1.9.0.v20181106-1534

CQ: 20214
CQ: 20215
CQ: 20216
See: https://github.com/mockito/mockito/issues/1482
Change-Id: I3ac744f7247c71f01d50f7f409fee5825f3d5295
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

In JDK 9 and later, the default locale data uses data derived from the
Unicode Consortium's Common Locale Data Repository (CLDR). So there are
changes with respect to some locales.

For example the short date-time format is ‹{1}, {0}› in the CLDR locale,
as opposed to {1} {0} in the JRE locale data.

See: https://bugs.openjdk.java.net/browse/JDK-8206961
See: https://www.unicode.org/cldr/charts/29/by_type/date_&_time.gregorian.html#1141bf54834c4261
Change-Id: I7535821e8ecd8702a95db8732cbbf3a4a7385eca
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Replace javax.xml.bind.DatatypeConverter, that is not available any
more in Java 11 and later with Hex utility from non optional Bouncy
Castle library.

Bug: 540790
Change-Id: I9903c00ecc1a434e9795b8ba9267f02628fdc0e9
Signed-off-by: David Ostrovsky <david@ostrovsky.org>

As reported by Error Prone:

An inner class should be static unless it references members of its
enclosing class. An inner class that is made non-static unnecessarily
uses more memory and does not make the intent of the class clear.

See https://errorprone.info/bugpattern/ClassCanBeStatic

Change-Id: Ib99d120532630dba63cf400cc1c61c318286fc41
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
(cherry picked from commit ee40efcea4)

Error Prone reports the warning on several classes:

   [NonOverridingEquals] equals method doesn't override Object.equals;
   if this is a type-specific helper for a method that does override
   Object.equals, either inline it into the callers or rename it to
   avoid ambiguity.

   See https://errorprone.info/bugpattern/NonOverridingEquals

Most of these are in the public API, so we can't rename or inline them
without breaking the API. FileSnapshot is not part of the public API,
but clients may be using it anyway, so we also shouldn't change that.

Suppress all the warnings instead. Having the check at severity ERROR
will at least make sure we don't introduce any new occurrences.

Change-Id: I92345c11256f06b4fa03ccc13337f72af5a43591
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>

Change-Id: I846b6d99867767409536e7c9bd0cbd11d9236074
Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>