* CachedPackUriProvider: size should be a long (not an int)

* DescribeCommand: use glob match instead of path match

* FetchCommandTest: test add/update/delete fetch

* FileRepository: Don't use deprecated RefDatabase#getRefs(String)
* BatchRefUpdate: Don't use deprecated RefDatabase#getRefs(String)

* Merge branch 'stable-4.11'

* Fix javadoc in org.eclipse.jgit internal and fsck packages
* Fix javadoc in org.eclipse.jgit ignore package

* Fix LockFile semantics when running on NFS

* Cleanup: Remove trailing whitespace
* Partially revert c0ad77d8 "Enhance Eclipse save actions"

* Support overriding a batch's reflog on a per-ReceiveCommand basis

* LfsProtocolServlet: Add support for rate limit and bandwidth limit errors
* LfsProtocolServlet: Always include message in error response
* LfsRepository{NotFound,ReadOnly}: Externalize message strings

* Ignore IOException thrown from close

* In TestRepository, use a consistent clock

* NoteMapTest: Open TreeWalk instances in try-with-resource
* ObjectDirectoryTest: Fix warnings about variable hiding
* PackWriterTest: Open RevWalk in try-with-resource
* PatchIdDiffFormatterTest: Open Git and PatchIdDiffFormatter in try-with-resource
* PathSuffixFilterTest: Open TreeWalk in try-with-resource
* PostOrderTreeWalkTest: Open TreeWalk in try-with-resource
* PullCommandWithRebaseTest: Open RevWalk in try-with-resource
* PushCommandTest: Open Git instances in try-with-resource
* RacyGitTests: Open NameConflictTreeWalk in try-with-resource
* RecursiveMergerTest: Open TreeWalk and BufferedReader in try-with-resource
* ReflogConfigTest: refactor commit method to avoid variable hiding
* Update .mailmap
* RefDirectoryTest: Fix warning about member variable hiding
* ReflogResolveTest: Open Git instances in try-with-resource
* ReflogTest: Open Git instances in try-with-resource
* RepoCommandTest: Open Git instances in try-with-resource

* Null-annotated Repository class and fixed related compiler errors

* Use japicmp instead of clirr to detect API changes

* Delete deprecated PackWriter.preparePack() methods
* Delete deprecated class IgnoreRule
* Delete deprecated checkoutEntry() methods in DirCacheCheckout

* Add/fix since tags for new API for push certificates

* Fix incorrect "''" in CLIText.properties

* Improve feature names to become understandable by end users
* Update kepler orbit version to R20130517111416

* IndexDiff: Provide stage state for conflicting entries

* Fix redundant null check warning in Repository

* Throw formal CheckoutConflictException on hard reset

* Add all paths option to CheckoutCommand

* Reuse ObjectReader for all objects touched during checkout