Clean deps

build.gradle

 subprojects {
   apply plugin: 'com.github.hierynomus.license'
   apply plugin: 'io.spring.dependency-management'
-  apply plugin: 'java'
   apply plugin: 'jacoco'
+  apply plugin: 'java'
   apply plugin: 'idea'
   apply plugin: 'org.owasp.dependencycheck'
 
       dependency 'io.jsonwebtoken:jjwt-api:0.10.5'
       dependency 'io.jsonwebtoken:jjwt-impl:0.10.5'
       dependency 'io.jsonwebtoken:jjwt-jackson:0.10.5'
+      dependency 'io.netty:netty-all:4.0.51.Final'
       dependency 'com.sun.mail:javax.mail:1.5.6'
       dependency 'javax.annotation:javax.annotation-api:1.3.1'
       dependency 'javax.servlet:javax.servlet-api:3.0.1'
       dependency 'javax.xml.bind:jaxb-api:2.3.0'
       dependency 'junit:junit:4.12'
       dependency 'net.jpountz.lz4:lz4:1.3.0'
+      dependency 'net.lightbody.bmp:littleproxy:1.1.0-beta-bmp-17'
       dependency 'org.awaitility:awaitility:3.1.6'
       dependency 'org.apache.commons:commons-csv:1.4'
       dependency 'org.apache.commons:commons-email:1.5'
         exclude 'org.elasticsearch.plugin:reindex-client'
         exclude 'org.elasticsearch.plugin:rank-eval-client'
       }
-      dependency('org.elasticsearch:mocksocket:1.0')
-      dependency('org.codelibs.elasticsearch.module:analysis-common:6.8.0')
+      dependency 'org.elasticsearch:mocksocket:1.0'
+      dependency 'org.codelibs.elasticsearch.module:analysis-common:6.8.0'
       dependency 'org.freemarker:freemarker:2.3.20'
       dependency 'org.hamcrest:hamcrest-all:1.3'
       dependency 'org.jsoup:jsoup:1.11.3'
       dependency 'org.sonarsource.orchestrator:sonar-orchestrator:3.26.0.2111'
       dependency 'org.sonarsource.update-center:sonar-update-center-common:1.18.0.487'
       dependency 'org.subethamail:subethasmtp:3.1.7'
+      dependency 'org.yaml:snakeyaml:1.17'
       dependency 'xml-apis:xml-apis:1.4.01'  
 
       // please keep this list alphabetically ordered

plugins/sonar-xoo-plugin/build.gradle

   compile 'commons-io:commons-io'
   compile 'commons-lang:commons-lang'
   compile 'org.apache.commons:commons-csv'
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
   compileOnly 'com.google.code.findbugs:jsr305'
-  runtime project(path: ':sonar-plugin-api', configuration: 'shadow')
-  compileOnly project(path: ':sonar-plugin-api')
 
   testCompile 'junit:junit'
   testCompile 'org.assertj:assertj-core'

server/sonar-ce-common/build.gradle

 dependencies {
   // please keep the list grouped by configuration and ordered by name
 
+  compile 'com.google.guava:guava'
   compile 'org.slf4j:jul-to-slf4j'
   compile 'org.slf4j:slf4j-api'
+  compile project(':server:sonar-ce-task')
   compile project(':server:sonar-db-dao')
+  compile project(':server:sonar-server-common')
+  compile project(':sonar-core')
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
 
   compileOnly 'com.google.code.findbugs:jsr305'
-  compileOnly project(':server:sonar-ce-task')
-  compileOnly project(':server:sonar-server-common')
 
   testCompile 'com.google.code.findbugs:jsr305'
-  testCompile 'com.h2database:h2'
   testCompile 'com.tngtech.java:junit-dataprovider'
+  testCompile 'commons-lang:commons-lang'
   testCompile 'junit:junit'
   testCompile 'org.apache.logging.log4j:log4j-api'
   testCompile 'org.apache.logging.log4j:log4j-core'
   testCompile 'org.assertj:assertj-core'
   testCompile 'org.assertj:assertj-guava'
-  testCompile 'org.mockito:mockito-core'
-  testCompile project(':sonar-plugin-api')
-  testCompile project(':sonar-core')
+  testCompile 'org.hamcrest:hamcrest-all'
+  testCompile project(':sonar-plugin-api-impl')
   testCompile project(':server:sonar-db-testing')
   testCompile project(path: ":server:sonar-server-common", configuration: "tests")
+
+  testRuntime 'com.h2database:h2'
 }

server/sonar-ce-task-projectanalysis/build.gradle

   compile 'org.slf4j:jul-to-slf4j'
   compile 'org.slf4j:slf4j-api'
 
+  compile 'commons-codec:commons-codec'
+  compile 'commons-io:commons-io'
+  compile 'commons-lang:commons-lang'
+  compile 'com.google.code.gson:gson'
+  compile 'com.google.guava:guava'
+  compile 'com.google.code.findbugs:jsr305'
+  compile 'com.google.protobuf:protobuf-java'
+  compile 'com.googlecode.java-diff-utils:diffutils'
+  compile 'org.mybatis:mybatis'
+  compile 'org.picocontainer:picocontainer'
+  
+  compile project(':sonar-core')
+  compile project(':server:sonar-ce-task')
+  compile project(':server:sonar-db-core')
+  compile project(':server:sonar-db-dao')
+  compile project(':server:sonar-db-migration')
+  compile project(':server:sonar-process')
+  compile project(':server:sonar-server-common')
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
+  compile project(':sonar-plugin-api-impl')
+  compile project(':sonar-duplications')
+  compile project(':sonar-scanner-protocol')
+
   compileOnly 'com.google.code.findbugs:jsr305'
-  compileOnly 'com.googlecode.java-diff-utils:diffutils'
-  compileOnly project(':sonar-core')
-  compileOnly project(':server:sonar-ce-task')
-  compileOnly project(':server:sonar-db-dao')
-  compileOnly project(':server:sonar-process')
-  compileOnly project(':server:sonar-server-common')
-  compileOnly project(':sonar-plugin-api')
-  compileOnly project(':sonar-plugin-api-impl')
-  compileOnly project(':sonar-duplications')
 
   testCompile 'com.google.code.findbugs:jsr305'
   testCompile 'com.h2database:h2'
   testCompile 'org.mockito:mockito-core'
   testCompile 'org.reflections:reflections'
   testCompile project(':server:sonar-db-testing')
+  testCompile project(':sonar-testing-harness')
   testCompile project(path: ":server:sonar-ce-task", configuration: "tests")
   testCompile project(path: ":server:sonar-server", configuration: "tests")
   testCompile project(path: ":server:sonar-server-common", configuration: "tests")

server/sonar-ce-task/build.gradle

 dependencies {
   // please keep the list grouped by configuration and ordered by name
 
+  compile 'com.google.guava:guava'
   compile 'org.picocontainer:picocontainer'
   compile 'org.slf4j:jul-to-slf4j'
   compile 'org.slf4j:slf4j-api'
 
-  compile project(':server:sonar-process')
+  compile project(':server:sonar-db-dao')
   compile project(':server:sonar-server-common')
   compile project(':sonar-core')
-  compileOnly project(path: ':sonar-plugin-api')
+  compileOnly project(path: ':sonar-plugin-api', configuration: 'shadow')
 
   compileOnly 'com.google.code.findbugs:jsr305'
 

server/sonar-ce/build.gradle

 
 dependencies {
   // please keep the list grouped by configuration and ordered by name
-
+  compile 'com.google.guava:guava'
   compile 'com.google.protobuf:protobuf-java'
+  compile 'com.hazelcast:hazelcast'
+  compile 'commons-io:commons-io'
+  compile 'org.apache.commons:commons-dbcp2'
   compile 'org.nanohttpd:nanohttpd'
+  compile 'org.picocontainer:picocontainer'
   compile project(':server:sonar-ce-common')
   compile project(':server:sonar-ce-task')
   compile project(':server:sonar-ce-task-projectanalysis')
+  compile project(':server:sonar-db-dao')
+  compile project(':server:sonar-db-core')
+  compile project(':server:sonar-process')
+  compile project(':server:sonar-ce-task')
   compile project(':server:sonar-server-common')
-
+  compile project(':sonar-core')
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
+  compile project(':sonar-plugin-api-impl')
+  compile project(':sonar-ws')
+  
   compileOnly 'com.google.code.findbugs:jsr305'
 
   testCompile 'com.google.code.findbugs:jsr305'
-  testCompile 'com.h2database:h2'
   testCompile 'com.tngtech.java:junit-dataprovider'
   testCompile 'junit:junit'
   testCompile 'org.assertj:assertj-core'
-  testCompile 'org.assertj:assertj-guava'
   testCompile 'org.mockito:mockito-core'
+  testCompile 'org.slf4j:slf4j-api'
+  
   testCompile project(':server:sonar-db-testing')
+
+  testRuntime 'com.h2database:h2'
+
 }

server/sonar-db-core/build.gradle

 
   compile 'ch.qos.logback:logback-classic'
   compile 'ch.qos.logback:logback-core'
-  compile 'commons-codec:commons-codec'
-  compile 'org.apache.commons:commons-dbcp2'
+  compile 'com.google.guava:guava'
   compile 'commons-dbutils:commons-dbutils'
-  compile 'net.jpountz.lz4:lz4'
-  compile 'org.apache.commons:commons-csv'
+  compile 'commons-io:commons-io'
+  compile 'commons-lang:commons-lang'
+  compile 'org.apache.commons:commons-dbcp2'
   compile 'org.mybatis:mybatis'
+  compile 'org.picocontainer:picocontainer'
   compile 'org.slf4j:slf4j-api'
   compile project(':server:sonar-process')
-  compile project(':sonar-core')
-  compile project(':sonar-scanner-protocol')
   compile project(path: ':sonar-plugin-api', configuration: 'shadow')
   compile project(':sonar-plugin-api-impl')
 
   from sourceSets.test.output
 }
 
-configurations {
-  tests
-}
+configurations { tests { extendsFrom testRuntime } }
 
 artifacts {
    tests testJar

server/sonar-db-dao/build.gradle

 dependencies {
   // please keep the list grouped by configuration and ordered by name
 
+  compile 'com.google.guava:guava'
+  compile 'com.google.protobuf:protobuf-java'
+  compile 'commons-dbutils:commons-dbutils'
+  compile 'commons-io:commons-io'
+  compile 'commons-lang:commons-lang'
+  compile 'net.jpountz.lz4:lz4'
+  compile 'org.mybatis:mybatis'
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
+
   compile project(':server:sonar-db-core')
-  compile project(':server:sonar-db-migration')
   compile project(':sonar-core')
 
   compileOnly 'com.google.code.findbugs:jsr305'

server/sonar-db-migration/build.gradle

 dependencies {
   // please keep the list grouped by configuration and ordered by name
 
+  compile 'com.google.guava:guava'
+  compile 'commons-lang:commons-lang'
+  compile 'commons-codec:commons-codec'
+  compile 'org.picocontainer:picocontainer'
+  compile 'commons-dbutils:commons-dbutils'
+
   compile project(':server:sonar-db-core')
+  compile project(':server:sonar-process')
   compile project(':sonar-core')
 
   compileOnly 'com.google.code.findbugs:jsr305'
   testCompile 'junit:junit'
   testCompile 'org.assertj:assertj-core'
   testCompile 'org.dbunit:dbunit'
-  testCompile 'org.mockito:mockito-core'
   testCompile 'org.mindrot:jbcrypt'
+  testCompile 'org.mockito:mockito-core'
+  testCompile project(':sonar-scanner-protocol')
   testCompile project(':sonar-testing-harness')
   testCompile project(':server:sonar-db-core').sourceSets.test.output
 

server/sonar-db-testing/build.gradle

 
 dependencies {
   // please keep the list grouped by configuration and ordered by name
-
   compile 'org.dbunit:dbunit'
-
+  
   compile project(':server:sonar-db-core').sourceSets.test.output
   compile project(':server:sonar-db-dao').sourceSets.test.output
-  compile project(':sonar-testing-harness')
 }

server/sonar-main/build.gradle

   // please keep the list grouped by configuration and ordered by name
 
   compile 'ch.qos.logback:logback-classic'
+  compile 'ch.qos.logback:logback-core'
+
   // Required by our usage of Guava for clustering : CeWorkerFactoryImpl.getClusteredWorkerUUIDs()
   compile 'com.google.guava:guava'
   compile 'com.hazelcast:hazelcast'
-  compile 'com.hazelcast:hazelcast-client'
+  compile 'commons-io:commons-io'
+  compile 'commons-lang:commons-lang'
+  compile 'io.netty:netty-common'
   compile 'org.apache.logging.log4j:log4j-to-slf4j'
   compile 'org.apache.logging.log4j:log4j-api'
   compile 'org.elasticsearch.client:transport'
+  compile 'org.elasticsearch:elasticsearch'
+  compile 'org.elasticsearch:elasticsearch-core'
+  compile 'org.elasticsearch.plugin:transport-netty4-client'
   compile 'org.slf4j:slf4j-api'
   compile 'org.yaml:snakeyaml'
+  
   compile project(':server:sonar-process')
+  compile project(':sonar-core')
 
   compileOnly 'com.google.code.findbugs:jsr305'
 

server/sonar-process/build.gradle

   // please keep the list grouped by configuration and ordered by name
 
   compile 'ch.qos.logback:logback-classic'
+  compile 'ch.qos.logback:logback-core'
   compile 'commons-codec:commons-codec'
   compile 'commons-io:commons-io'
   compile 'commons-lang:commons-lang'
   compile 'com.google.code.gson:gson'
   compile 'com.google.guava:guava'
+  compile 'com.google.protobuf:protobuf-java'
   compile 'com.hazelcast:hazelcast'
   compile 'org.slf4j:jul-to-slf4j'
   compile 'org.slf4j:slf4j-api'
   compile project(':sonar-core')
-  
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
+
   compileOnly 'com.google.code.findbugs:jsr305'
-  compileOnly 'com.google.protobuf:protobuf-java'
-  compileOnly 'org.nanohttpd:nanohttpd'
 
   testCompile 'com.google.code.findbugs:jsr305'
   testCompile 'com.google.protobuf:protobuf-java'
   testCompile 'com.tngtech.java:junit-dataprovider'
+  testCompile 'junit:junit'
   testCompile 'org.assertj:assertj-core'
-  testCompile 'org.eclipse.jetty:jetty-server'
+  testCompile 'org.hamcrest:hamcrest-core'
   testCompile 'org.mockito:mockito-core'
   testCompile 'org.awaitility:awaitility'
   testCompile project(':sonar-testing-harness')

server/sonar-server-common/build.gradle

   // please keep the list grouped by configuration and ordered by name
 
   compile 'org.apache.commons:commons-email'
+  compile 'commons-io:commons-io'
+  compile 'commons-lang:commons-lang'
   compile 'com.google.guava:guava'
   compile 'org.slf4j:slf4j-api'
   compile 'com.squareup.okhttp3:okhttp'
   compile 'org.elasticsearch.client:transport'
   compile project(':server:sonar-db-dao')
+  compile project(':server:sonar-db-migration')
+  compile project(':server:sonar-process')
   compile project(':sonar-core')
   compile project(':sonar-markdown')
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
   compile project(':sonar-ws')
 
-  compileOnly project(':sonar-plugin-api')
-  compileOnly project(':server:sonar-process')
-
   compileOnly 'com.google.code.findbugs:jsr305'
 
   // "tests" dependencies are pulled by other modules which depends on "tests" configuration, "testCompile" are not pulled
   testCompile 'com.google.code.findbugs:jsr305'
   testCompile 'com.h2database:h2'
   testCompile 'com.squareup.okhttp3:mockwebserver'
+  testCompile 'com.squareup.okio:okio'
   testCompile 'com.tngtech.java:junit-dataprovider'
   testCompile 'junit:junit'
   testCompile 'org.apache.logging.log4j:log4j-api'
   testCompile 'org.apache.logging.log4j:log4j-core'
   testCompile 'org.assertj:assertj-core'
-  testCompile 'org.assertj:assertj-guava'
+  testCompile 'org.hamcrest:hamcrest-core'
   testCompile 'org.mockito:mockito-core'
   testCompile project(':server:sonar-db-testing')
+  testCompile project(path: ':sonar-plugin-api', configuration: 'shadow')
   testCompile project(':sonar-plugin-api-impl')
+  testCompile project(':sonar-testing-harness')
 }
 
 task testJar(type: Jar) {

server/sonar-server-common/src/main/java/org/sonar/server/qualityprofile/QPMeasureData.java

 package org.sonar.server.qualityprofile;
 
 import com.google.common.collect.ImmutableSortedSet;
-import com.google.gson.JsonObject;
-import com.google.gson.JsonParser;
 import java.io.StringWriter;
 import java.util.Comparator;
 import java.util.Map;
 import java.util.stream.Collectors;
 import java.util.stream.StreamSupport;
 import javax.annotation.concurrent.Immutable;
+import org.sonar.api.internal.google.gson.JsonObject;
+import org.sonar.api.internal.google.gson.JsonParser;
 import org.sonar.api.utils.text.JsonWriter;
 import org.sonar.core.util.UtcDateUtils;
 

server/sonar-server/build.gradle

   compile 'ch.qos.logback:logback-core'
   compile 'com.google.code.gson:gson'
   compile 'com.google.protobuf:protobuf-java'
-  compile 'com.googlecode.java-diff-utils:diffutils'
-  compile 'com.hazelcast:hazelcast-client'
   compile 'commons-dbutils:commons-dbutils'
   compile 'io.jsonwebtoken:jjwt-api'
   compile 'io.jsonwebtoken:jjwt-impl'
-  compile 'javax.xml.bind:jaxb-api'
   compile 'org.apache.httpcomponents:httpclient'
   compile 'org.apache.logging.log4j:log4j-api'
   compile 'org.apache.tomcat.embed:tomcat-embed-core'
   compile 'org.apache.commons:commons-dbcp2'
-  compile 'org.elasticsearch.client:transport'
   compile 'org.picocontainer:picocontainer'
   compile 'org.slf4j:jul-to-slf4j'
   compile 'org.slf4j:slf4j-api'
   compile project(':server:sonar-process')
   compile project(':server:sonar-server-common')
   compile project(':sonar-core')
+  compile project(':sonar-duplications')
   compile project(':sonar-scanner-protocol')
   compile project(':sonar-markdown')
-  compile project(':sonar-duplications')
-  runtime project(path: ':sonar-plugin-api', configuration: 'shadow')
-  compileOnly project(path: ':sonar-plugin-api')
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
   compile project(':sonar-plugin-api-impl')
   compile project(':sonar-ws')
 
   testCompile 'org.subethamail:subethasmtp'
   testCompile project(':server:sonar-db-testing')
   testCompile project(path: ":server:sonar-server-common", configuration: "tests")
+  testCompile project(':sonar-testing-harness')
 
   runtime 'io.jsonwebtoken:jjwt-jackson'
 }

sonar-application/build.gradle

 
 dependencies {
   // please keep list ordered
+  compile 'org.slf4j:slf4j-api'
 
   compile 'org.elasticsearch.client:transport'
   compile project(':server:sonar-ce')
   compile project(':server:sonar-main')
   compile project(':server:sonar-process')
   compile project(':server:sonar-server')
+  compile project(':sonar-core')
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
+  compile project(':sonar-plugin-api-impl')
 
   compileOnly 'com.google.code.findbugs:jsr305'
 
   bundledPlugin "org.sonarsource.slang:sonar-scala-plugin:${slangVersion}@jar"
   bundledPlugin 'org.sonarsource.typescript:sonar-typescript-plugin:1.9.0.3766@jar'
   bundledPlugin 'org.sonarsource.xml:sonar-xml-plugin:2.0.1.2020@jar'
-
-  testCompile 'junit:junit'
-  testCompile 'org.assertj:assertj-core'
-  testCompile 'org.mockito:mockito-core'
 }
 
 jar {

sonar-check-api/build.gradle

 
 dependencies {
   compileOnly 'com.google.code.findbugs:jsr305'
-
-  testCompile 'junit:junit'
 }

sonar-core/build.gradle

 
   compile 'ch.qos.logback:logback-classic'
   compile 'ch.qos.logback:logback-core'
+  compile 'com.google.guava:guava'
   compile 'com.google.protobuf:protobuf-java'
   compile 'commons-codec:commons-codec'
-  compile 'org.apache.commons:commons-csv'
+  compile 'commons-io:commons-io'
+  compile 'commons-lang:commons-lang'
   compile 'org.codehaus.sonar:sonar-classloader'
   compile 'org.picocontainer:picocontainer'
   compile 'org.slf4j:slf4j-api'
   testCompile 'com.tngtech.java:junit-dataprovider'
   testCompile 'junit:junit'
   testCompile 'org.assertj:assertj-core'
+  testCompile 'org.hamcrest:hamcrest-core'
   testCompile 'org.mockito:mockito-core'
   testCompile 'org.simpleframework:simple'
   testCompile project(':sonar-testing-harness')

sonar-duplications/build.gradle

   // please keep list ordered
 
   compile 'org.codehaus.sonar:sonar-channel'
-  compile project(':sonar-plugin-api')
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
 
   compileOnly 'com.google.code.findbugs:jsr305'
 
   testCompile 'commons-io:commons-io'
   testCompile 'junit:junit'
   testCompile 'org.assertj:assertj-core'
+  testCompile 'org.hamcrest:hamcrest-core'
   testCompile 'org.mockito:mockito-core'
   testCompile 'pmd:pmd:4.3'
 }

sonar-markdown/build.gradle

 
   compile 'commons-lang:commons-lang'
   compile 'org.codehaus.sonar:sonar-channel'
-  compile 'org.slf4j:slf4j-api'
 
   testCompile 'ch.qos.logback:logback-classic'
   testCompile 'junit:junit'

sonar-plugin-api-impl/build.gradle

   }
 }
 
-apply plugin: 'com.github.johnrengelman.shadow'
-
 dependencies {
   // please keep the list grouped by configuration and ordered by name
 
   compile 'commons-codec:commons-codec'
   compile 'commons-io:commons-io'
   compile 'commons-lang:commons-lang'
-  compile 'com.google.code.gson:gson'
   compile 'org.apache.commons:commons-csv'
 
-  // shaded, but not relocated
-  compile project(':sonar-check-api')
-  compile project(':sonar-plugin-api')
-  compile project(':sonar-ws')
-
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
 
-  shadow 'org.codehaus.staxmate:staxmate'
-  shadow 'org.codehaus.woodstox:stax2-api'
-  shadow 'org.codehaus.woodstox:woodstox-core-lgpl'
-
-  compileOnly 'ch.qos.logback:logback-classic'
-  compileOnly 'ch.qos.logback:logback-core'
   compileOnly 'com.google.code.findbugs:jsr305'
-  compileOnly 'javax.servlet:javax.servlet-api'
   compileOnly 'junit:junit'
-  compileOnly 'org.slf4j:slf4j-api'
 
-  testCompile 'com.google.guava:guava'
+  testCompile 'junit:junit'
+  testCompile 'com.google.code.findbugs:jsr305'
+
   testCompile 'com.tngtech.java:junit-dataprovider'
   testCompile 'org.assertj:assertj-core'
   testCompile 'org.mockito:mockito-core'
-  testCompile project(':sonar-scanner-engine')
   testCompile project(':server:sonar-server')
-
-}
-
-sourceSets {
-  // Make the compileOnly dependencies available when compiling/running tests
-  test.compileClasspath += configurations.compileOnly + configurations.shadow
-  test.runtimeClasspath += configurations.compileOnly + configurations.shadow
-}
-
-def on3Digits(version) {
-  def projectversion3digits = version - ~/-\w+/
-  projectversion3digits = projectversion3digits.tokenize('.').plus(0).take(3).join('.')
-}
-
-import org.apache.tools.ant.filters.ReplaceTokens
-processResources {
-  filter ReplaceTokens, tokens: [
-    // The build version is composed of 4 fields, including the semantic version and the build number provided by Travis.
-    'project.buildVersion': project.version.endsWith('SNAPSHOT') ? project.version : on3Digits(project.version) + '.' + System.getProperty("buildNumber"),
-    'project.version.3digits': project.version.endsWith('SNAPSHOT') ? project.version : on3Digits(project.version)
-  ]
-}
-
-shadowJar {
-  configurations = [project.configurations.default]
-  relocate('com.google', 'org.sonar.api.internal.google')
-  relocate('org.apache.commons', 'org.sonar.api.internal.apachecommons')
-  dependencies {
-      exclude(dependency('org.codehaus.woodstox:woodstox-core-lgpl'))
-      exclude(dependency('org.codehaus.woodstox:stax2-api'))
-      exclude(dependency('org.codehaus.staxmate:staxmate'))
-   }
 }
 
 artifactoryPublish.skip = false
 publishing {
   publications {
     mavenJava(MavenPublication) {
-      artifact source: shadowJar, classifier: null
+      from components.java
       if (release) {
         artifact sourcesJar
         artifact javadocJar

sonar-plugin-api/build.gradle

   compile 'commons-io:commons-io'
   compile 'commons-lang:commons-lang'
   compile 'com.google.code.gson:gson'
-  compile 'org.apache.commons:commons-csv'
 
   // shaded, but not relocated
   compile project(':sonar-check-api')
   shadow 'org.codehaus.woodstox:woodstox-core-lgpl'
 
   compileOnly 'ch.qos.logback:logback-classic'
-  compileOnly 'ch.qos.logback:logback-core'
   compileOnly 'com.google.code.findbugs:jsr305'
   compileOnly 'javax.servlet:javax.servlet-api'
   compileOnly 'junit:junit'
   testCompile 'org.assertj:assertj-core'
   testCompile 'org.mockito:mockito-core'
   testCompile project(':sonar-plugin-api-impl')
-
 }
 
 sourceSets {
   configurations = [project.configurations.default]
   relocate('com.google', 'org.sonar.api.internal.google')
   relocate('org.apache.commons', 'org.sonar.api.internal.apachecommons')
-  dependencies {
-      exclude(dependency('org.codehaus.woodstox:woodstox-core-lgpl'))
-      exclude(dependency('org.codehaus.woodstox:stax2-api'))
-      exclude(dependency('org.codehaus.staxmate:staxmate'))
-   }
 }
 
+// only interested in shadowJar
+jar.enabled = false
 artifactoryPublish.skip = false
 
 publishing {

sonar-scanner-engine/build.gradle

 dependencies {
   // please keep the list ordered
 
+  compile 'ch.qos.logback:logback-classic'
+  compile 'ch.qos.logback:logback-core'
   compile 'commons-codec:commons-codec'
+  compile 'commons-io:commons-io'
   compile 'commons-lang:commons-lang'
   compile 'com.google.code.gson:gson'
   compile 'org.apache.commons:commons-csv'
   compile 'org.freemarker:freemarker'
+  compile 'com.google.protobuf:protobuf-java'
+  compile 'com.squareup.okhttp3:okhttp'
+  compile 'org.codehaus.staxmate:staxmate'
+  compile 'org.codehaus.woodstox:stax2-api'
+  compile 'org.codehaus.woodstox:woodstox-core-lgpl'
+  compile 'org.picocontainer:picocontainer'
   compile 'org.slf4j:jcl-over-slf4j'
   compile 'org.slf4j:jul-to-slf4j'
   compile 'org.slf4j:log4j-over-slf4j'
   compile 'org.slf4j:slf4j-api'
+  compile 'org.sonarsource.update-center:sonar-update-center-common'
+
   compile project(':sonar-core')
   compile project(':sonar-scanner-protocol')
   compile project(':sonar-ws')
   compile project(':sonar-duplications')
+
   compile project(':sonar-plugin-api-impl')
-  runtime project(path: ':sonar-plugin-api', configuration: 'shadow')
-  compileOnly project(path: ':sonar-plugin-api')
+  compile project(path: ':sonar-plugin-api', configuration: 'shadow')
 
   compileOnly 'com.google.code.findbugs:jsr305'
 
   testCompile 'com.squareup.okhttp3:mockwebserver'
+  testCompile 'com.squareup.okhttp3:okhttp'
+  testCompile 'com.squareup.okio:okio'
   testCompile 'com.tngtech.java:junit-dataprovider'
-  testCompile 'javax.servlet:javax.servlet-api'
+  testCompile 'commons-io:commons-io'
   testCompile 'junit:junit'
-  testCompile 'net.javacrumbs.json-unit:json-unit-assertj:0.0.15'
   testCompile 'org.assertj:assertj-core'
+  testCompile 'org.codehaus.staxmate:staxmate'
+  testCompile 'org.hamcrest:hamcrest-core'
   testCompile 'org.mockito:mockito-core'
+  testCompile 'stax:stax-api'
   testCompile project(':plugins:sonar-xoo-plugin')
   testCompile project(':sonar-plugin-api').sourceSets.test.output
 

sonar-scanner-protocol/build.gradle

   compile 'com.google.code.gson:gson'
   compile 'com.google.protobuf:protobuf-java'
   compile 'commons-io:commons-io'
-  compile 'net.jpountz.lz4:lz4'
+  compile 'commons-lang:commons-lang'
   compile project(':sonar-core')
 
   compileOnly 'com.google.code.findbugs:jsr305'
 
   testCompile 'com.google.guava:guava'
   testCompile 'junit:junit'
-  testCompile 'net.javacrumbs.json-unit:json-unit-assertj:0.0.15'
   testCompile 'org.assertj:assertj-core'
-  testCompile 'org.mockito:mockito-core'
 }
 
 //create a single Jar with all dependencies

sonar-scanner-protocol/src/main/java/org/sonar/scanner/protocol/input/MultiModuleProjectRepository.java

  */
 package org.sonar.scanner.protocol.input;
 
-import com.google.common.collect.Maps;
+import java.util.HashMap;
 import java.util.Map;
 import java.util.Optional;
 import javax.annotation.CheckForNull;
 import javax.annotation.Nullable;
 
 public class MultiModuleProjectRepository implements ProjectRepositories {
-  private Map<String, SingleProjectRepository> repositoryPerModule = Maps.newHashMap();
+  private Map<String, SingleProjectRepository> repositoryPerModule = new HashMap<>();
 
   public MultiModuleProjectRepository addFileDataToModule(String moduleKey, @Nullable String path, FileData fileData) {
     if (path == null || (fileData.hash() == null && fileData.revision() == null)) {

sonar-shutdowner/build.gradle

 
   testCompile 'junit:junit'
   testCompile 'org.assertj:assertj-core'
-  testCompile 'org.mockito:mockito-core'
 }
 
 jar {

sonar-testing-harness/build.gradle

   compile 'commons-io:commons-io'
   compile 'junit:junit'
   compile 'org.assertj:assertj-core'
-  compile 'org.hamcrest:hamcrest-all'
+  compile 'org.hamcrest:hamcrest-core'
   compile 'org.jsoup:jsoup'
 
   compileOnly 'com.google.code.findbugs:jsr305'

sonar-ws-generator/build.gradle

 
   compile 'com.google.code.gson:gson'
   compile 'com.google.guava:guava'
+  compile 'commons-io:commons-io'
   compile 'org.apache.velocity:velocity:1.7'
   compile 'org.slf4j:log4j-over-slf4j'
   compile 'org.sonarsource.orchestrator:sonar-orchestrator'
-  compile project(':sonar-ws')
 
   compileOnly 'com.google.code.findbugs:jsr305'
 }

sonar-ws/build.gradle

 
   compile 'com.google.protobuf:protobuf-java'
   compile 'com.squareup.okhttp3:okhttp'
-  compileOnly 'javax.annotation:javax.annotation-api'
 
   compileOnly 'com.google.code.findbugs:jsr305'
   compileOnly project(path: ':sonar-plugin-api', configuration: 'shadow')
 
   testCompile 'com.squareup.okhttp3:mockwebserver'
+  testCompile 'com.squareup.okio:okio'
+  testCompile 'commons-io:commons-io'
   testCompile 'commons-lang:commons-lang'
   testCompile 'junit:junit'
   testCompile 'org.assertj:assertj-core'
+  testCompile 'org.hamcrest:hamcrest-core'
   testCompile 'org.mockito:mockito-core'
   testCompile project(':sonar-testing-harness')
 }