Ensure LocalDiskRepositoryTestCase#setup fully uses MockSystemReader

Ensure LocalDiskRepositoryTestCase#setup fully uses MockSystemReader

FS#getFileStoreAttributes used the real userConfig and not the mocked
one. This led to test errors when running tests with Bazel since it
sandboxes tests which prevents they can write to ~/.gitconfig.

Fix this by first preparing the MockedSystemReader and the mocked config
before calling FS#getFileStoreAttributes.

Also fix ConfigTest which broke due to this change since it inherits
from LocalDiskRepositoryTestCase and calls its setup method which was
changed here. We can no longer assert by comparing plain text since FS
adds FileStoreAttributes to the mocked userConfig. Also the default
options seen by this test changed since we now use a mocked config.

Change-Id: I76bc7c94953fe979266147d3b309a68dda9d4dfe
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>