Thomas Wolf [Tue, 4 May 2021 21:48:56 +0000 (23:48 +0200)]
LockFile: create OutputStream only when needed
Don't create the stream eagerly in lock(); that may cause JGit to
exceed OS or JVM limits on open file descriptors if many locks need
to be created, for instance when creating many refs. Instead create
the output stream only when one really needs to write something.
Bug: 573328
Change-Id: If9441ed40494d46f594a896d34a5c4f56f91ebf4 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
In a distributed setting, one can have multiple datacenters use
reftables for serving, while the ground truth for the Ref database is
administered centrally. In this setting, replication delays combined
with compaction can cause update-index ranges to overlap.
Such a setting is used at Google, and the JGit code already handles
this correctly (modulo a bugfix that applied in change I8f8215b99a).
Remove the restriction that was applied at FileReftableDatabase.
Petr Hrebejk [Mon, 30 Nov 2020 19:19:53 +0000 (20:19 +0100)]
Fix PackInvalidException when fetch and repack run concurrently
We are running several servers with jGit. We need to run repack from
time to time to keep the repos performant. I.e. after push we test how
many small packs are in the repo and when a threshold is reached we run
the repack.
After upgrading jGit version we've found that if someone does the clone
at the time repack is running the clone sometimes (not always) fails
because the repack removes .pack file used by the clone. Server
exception and client error attached.
I've tracked down the cause and it seems to be introduced between jGit
5.2 (which we upgraded from) and 5.3 and being caused by this commit:
Move throw of PackInvalidException outside the catch -
https://github.com/eclipse/jgit/commit/afef866a44cd65fef292c174cad445b3fb526400
The problem is that when the throw was inside of the try block the last
catch block catched the exception and called openFailed(false) method.
It is true that it called it with invalidate = false, which is wrong.
The real problem though is that with the throw outside of the try block
the openFail is not called at all and the fields activeWindows and
activeCopyRawData are not set to 0. Which affects the later called tests
like: if (++activeCopyRawData == 1 && activeWindows == 0).
The fix for this is relatively simple keeping the throw outside of the
try block and still having the invalid field set to true. I did
exhaustive testing of the change running concurrent clones and pushes
indefinitely and with the patch applied it never fails while without the
patch it takes relatively short to get the error.
Matthias Sohn [Wed, 25 Nov 2020 16:00:09 +0000 (17:00 +0100)]
Ensure that GC#deleteOrphans respects pack lock
If pack or index files are guarded by a pack lock (.keep file)
deleteOrphans() should not touch the respective files protected by the
lock file. Otherwise it may interfere with PackInserter concurrently
inserting a new pack file and its index.
The problem was caused by the following race.
All mentioned files are located in "objects/pack/".
File endings relevant in "pack" dir:
.pack
.keep
.idx
.bitmap
When ReceivePack receives a pack file it executes the following steps:
ReceivePack.service():
receivePackAndCheckConnectivity():
receivePack():
receive the pack
parse the pack, returns packLock (.keep file)
PackInserter.flush():
write tmpPck file: "insert_<random>.pack"
write tmpIdx file: "insert_<random>.idx"
real pack name: "pack-<SHA1>.pack"
real index name: "pack-<SHA1>.idx"
atomic rename tmpPack to realPack
atomic rename tmpIdx to tmpIdx
execute commands
unlock pack by removing .keep file
trigger auto gc if enabled
When PackInserter.flush() renames the temporary pack to the final
"pack-xxx.pack" file the temporary pack index file "insert_xxx.idx"
has no matching .pack file with the same base name for a short interval.
If deleteOrphans() ran during that interval it deduced the pack index
file was orphaned. Subsequently the missing pack index caused
MissingObjectExceptions since objects contained in the pack couldn't be
looked up anymore.
Bug: https://bugs.chromium.org/p/gerrit/issues/detail?id=13544
Change-Id: I559c81e4b1d7c487f92a751bd78b987d32c98719 Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Thomas Wolf [Thu, 19 Nov 2020 12:23:05 +0000 (13:23 +0100)]
PacketLineIn: ensure that END != DELIM
Just allocate the two string objects directly. The previously used
new StringBuilder(0).toString() returns the same object for both END
and DELIM when run on Java 15, which breaks the wire protocol since
then END and DELIM cannot be distinguished anymore.
Bug: 568950
Change-Id: I9d54d7bf484948c24b51a094256bd9d38b085f35 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
(cherry picked from commit 7da0f0a8f37e35e9c3108588f1e6f7a7381d8f77)
Matthias Sohn [Sun, 7 Jun 2020 22:32:51 +0000 (00:32 +0200)]
Merge branch 'master' into stable-5.8
* master:
Add benchmark for strategies how to move a file
Add getter for unpackErrorHandler in ReceivePack
Upgrade maven-project-info-reports-plugin to 3.1.0
Upgrade maven-shade-plugin to 3.2.4
ObjectDirectoryInserter: Open FileOutputStream in try-with-resource
ObjectDirectoryInserter: Remove redundant 'throws' declarations
ObjectDirectory: Further clean up insertUnpackedObject
Add Git#shutdown for releasing resources held by JGit process
ApplyCommand: use context lines to determine hunk location
GPG: don't prompt for a passphrase for unprotected keys
Fix typo in org.eclipse.jgit.ssh.jsch.test MANIFEST
Fix ProtectedMembersInFinalClass warning flagged by error prone
Use version range to define fragment host bundle version
ObjectDirectory: Explicitly handle NoSuchFileException
ObjectDirectory: Fail immediately when atomic move is not supported
Fix jgit packaging
Fix InvalidInlineTag error flagged by error prone
Fix BadComparable error flagged by error prone
Add tests for RawTextComparator.WS_IGNORE_CHANGE.hash()
Update Orbit to R20200529191137 for final Eclipse release 2020-06
Organize manifest of org.eclipse.jgit.pgm
Do not include log4j implementation in jgit
Decouple JSch from JGit Core
Decouple BouncyCastle from JGit Core
Verify that the user home directory is valid
WindowCache: conditional JMX setup
RawTextComparator.WS_IGNORE_CHANGE must not compare whitespace
Revert "PackBitmapIndex: Not buffer inflated bitmap in BasePackBitmapIndex"
Update jetty to 9.4.28.v20200408
Add 4.16 staging target platform
In-memory SSH keys for the "no files" sshd tests
Builder API to configure SshdSessionFactories
TransportHttp: abort on time-out or on SocketException
Ignore core.eol if core.autocrlf=input
Attributes: fix handling of text=auto in combination with eol
Bazel: Remove superfluous dependencies flagged by unused_deps
Log stack trace if CachingKeyPairProvider hits unexpected exception
Update Orbit to S20200519202422 and ant to 1.10.8
Include full IssuerFingerprint in GPG signature
Bazel: Fix src_sha1 of bcpg-jdk15on
Suppress API error for new method BitmapIndex.Bitmap#retrieveCompressed
Fix wrong @since tags added in dcb0265
PackBitmapIndex: Set distance threshold
PackBitmapIndex: Not buffer inflated bitmap in BasePackBitmapIndex
PackBitmapIndex: Remove convertedBitmaps in the Remapper
PackBitmapIndex: Reduce memory usage in GC
PackBitmapIndex: Add AddToBitmapWithCacheFilter class
PackBitmapIndex: Add util methods and builder to BitmapCommit
PackBitmapIndex: Move BitmapCommit to a top-level class
Refactor: Make retriveCompressed an method of the Bitmap class
Fix downloading LFS Object fails behind proxy
Allow for using custom s3 host with lfs server
ReceivePack: adding IterativeConnectivityChecker
Moving transport/internal -> internal/transport
Fix error occurring during checkout
Change-Id: I675cfb9eee956bab4903f28d8021115afc753dcd Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Fri, 5 Jun 2020 11:01:11 +0000 (13:01 +0200)]
Add benchmark for strategies how to move a file
We can either
- try moving the file and, in case the target directory doesn't exist,
handle the NoSuchFileException this raises to create the target
directory
- or we always first test if the target directory exists and create it
in case it is missing
This means if the target directory of the move already exists the
first strategy is faster by around 25 us/op otherwise the second one
is faster by around 30 us/op. Which one is favorable depends on the
average probability that the target directory exists in real world
scenarios.
Change-Id: I03653b408b859a796508dfa1471b36c65633534e Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Jack Wickham [Fri, 22 May 2020 10:00:18 +0000 (11:00 +0100)]
Add getter for unpackErrorHandler in ReceivePack
The current mechanism for updating the unpack error handler requires
that the error handler is replaced entirely, including communicating
the error to the user. Adding a getter means that delegating
implementations can be constructed so that the error can be processed
before sending to the user, for example for logging.
Change-Id: I4b6f78a041d0f6f5b4076a9a5781565ca3857817 Signed-off-by: Jack Wickham <jwickham@palantir.com>
* stable-5.7:
ObjectDirectoryInserter: Open FileOutputStream in try-with-resource
ObjectDirectoryInserter: Remove redundant 'throws' declarations
ObjectDirectory: Further clean up insertUnpackedObject
ObjectDirectory: Explicitly handle NoSuchFileException
ObjectDirectory: Fail immediately when atomic move is not supported
Change-Id: I05186baa517388680fcc6825c940c4c772f26d32 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
ObjectWritingException and FileNotFoundException are subclasses
of IOException, which is already declared. Error does not need
to be explicitly declared.
Change-Id: I879820a33e10ec3a7ef676adc9c9148d2b3c4b27 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
ObjectDirectory: Further clean up insertUnpackedObject
- The code to move the file is repeated. Split it out into a
utility method.
- Remove the catch block for AtomicMoveNotSupportedException which
is redundant because it's handled in exactly the same way as the
IOException further down. The only exception we need to explicitly
handle differently in this block is NoSuchFileException.
- Improve the comments.
Change-Id: Ifc5490953ffb25ecd1c48a06289eccb3f19910c6 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Thomas Wolf [Fri, 24 Apr 2020 13:00:01 +0000 (15:00 +0200)]
ApplyCommand: use context lines to determine hunk location
If a hunk does not apply at the position stated in the hunk header
try to determine its position using the old lines (context and
deleted lines).
This is still a far cry from a full git apply: it doesn't do binary
patches, it doesn't handle git's whitespace options, and it's perhaps
not the fastest on big patches. C git hashes the lines and uses these
hashes to speed up matching hunks (and to do its whitespace magic).
Bug: 562348
Change-Id: Id0796bba059d84e648769d5896f497fde0b787dd Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Thomas Wolf [Sat, 9 Nov 2019 21:05:53 +0000 (22:05 +0100)]
GPG: don't prompt for a passphrase for unprotected keys
BouncyCastle supports reading GPG keys without passphrase since 1.62.
Handle this in JGit, too, and don't prompt for a passphrase unless
it's necessary.
Make two passes over the private key files, a first pass without
passphrase provider. If that succeeds it has managed to read a
matching key without passphrase. Otherwise, ask the user for
the passphrase and make a second pass over the key files.
BouncyCastle 1.65 still has no method to get the GPG "key grip" from
a given public key, so JGit still cannot determine the correct file
to read up front. (The file name is the key grip as 40 hex digits,
upper case, with extension ".key").
Bug: 548763
Change-Id: I448181276548c08716d913c7ba1b4bc64c62f952 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
David Ostrovsky [Fri, 22 May 2020 06:03:41 +0000 (08:03 +0200)]
Fix ProtectedMembersInFinalClass warning flagged by error prone
Running recent error prone version complaining on that code:
CharacterHead.java:22: error: [ProtectedMembersInFinalClass] Make
members of final classes package-private: <init>
protected CharacterHead(char expectedCharacter) {
^
(see https://errorprone.info/bugpattern/ProtectedMembersInFinalClass)
Did you mean 'CharacterHead(char expectedCharacter) {'
Bug: 562756
Change-Id: Ic46a0b07e46235592f6e63db631f583303420b73 Signed-off-by: David Ostrovsky <david@ostrovsky.org>
On the first attempt to move the temp file, NoSuchFileException can
be raised if the destination folder does not exist. Instead of handling
this implicitly in the catch of IOException and then continuing to
create the destination folder and try again, explicitly catch it and
create the destination folder. If any other IOException occurs, treat
it as an unexpected error and return FAILURE.
Subsequently, on the second attempt to move the temp file, if ANY kind
of IOException occurs, also consider this an unexpected error and
return FAILURE.
In both catch blocks for IOException, add logging at ERROR level.
Change-Id: I9de9ee3d2b368be36e02ee1c0daf8e844f7e46c8 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
ObjectDirectory: Fail immediately when atomic move is not supported
If atomic move is not supported, AtomicMoveNotSupportedException will
be thrown on the first attempt to move the temp file. There is no
point attempting the move operation a second time because it will only
fail for the same reason.
Add an immediate return of FAILURE on the first occasion. Remove the
unnecessary handling of the exception in the second block.
Change-Id: I4658a8b37cfec2d7ef0217c8346e512968d0964c Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Matthias Sohn [Wed, 3 Jun 2020 11:51:46 +0000 (13:51 +0200)]
Fix jgit packaging
- new jsch and gpg.bc fragments need to be included in their features
as fragments and require only the jgit bundle (not the jgit feature)
- feature org.eclipse.jgit should no longer include bouncycastle
- add missing url for gpg.bc feature in category.xml
- don't mark features as patch features
David Ostrovsky [Fri, 22 May 2020 05:53:59 +0000 (07:53 +0200)]
Fix InvalidInlineTag error flagged by error prone
Running recent error prone version complaining on that code:
RefDatabase.java:444: error: [InvalidInlineTag] Tag name `linkObjectId`
is unknown.
* Includes peeled {@linkObjectId}s. This is the inverse lookup of
^
(see https://errorprone.info/bugpattern/InvalidInlineTag)
Bug: 562756
Change-Id: If91da51d5138fb753c0550eeeb9e3883a394123d Signed-off-by: David Ostrovsky <david@ostrovsky.org>
David Ostrovsky [Fri, 22 May 2020 05:49:49 +0000 (07:49 +0200)]
Fix BadComparable error flagged by error prone
Running recent error prone version complaining on that code:
LfsPointer.java:171: error: [BadComparable] Possible sign flip from
narrowing conversion
return (int) (getSize() - o.getSize());
^
(see https://errorprone.info/bugpattern/BadComparable)
Did you mean 'return Long.compare(getSize(), o.getSize());'?
Bug: 562756
Change-Id: I0522f1025319a9290c448a064fbafdb4b16d1d59 Signed-off-by: David Ostrovsky <david@ostrovsky.org>
Matthias Sohn [Sun, 31 May 2020 21:33:09 +0000 (23:33 +0200)]
Organize manifest of org.eclipse.jgit.pgm
Use "organize manifest" to auto-cleanup the manifest of
org.eclipse.jgit.pgm. This removes some unused imports and unnecessary
manifest headers and updates use clauses.
Change-Id: Iacbd6d3b184c6fa8db28d9f06cbf56e57cc8ef5d Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Michael Keppler [Mon, 3 Dec 2018 16:25:51 +0000 (17:25 +0100)]
Do not include log4j implementation in jgit
As discussed in the bug, jgit should not include a logging
implementation, and instead rely on the product containing jgit to
configure the logging.
We have recently run into the situation, that installing egit in a (non
eclipse.org) RCP application breaks all the logging due to incompatible
logging implementations. Removal of the jgit logging implementation
should fix this.
Following further changes have been done for jgit command line:
* added log4j.properties to binary build of jgit.pgm. That file existed
in the git repository, but was not included in the eclipse binary build.
(maybe it is in the bazel build)
* removed apache.commons.logging package import from jgit.pgm. That
import is not used, and makes the logging even more confusing.
Bug: 514326
Change-Id: I6dc7d1462f0acfca9e2b1ac87e705617179ffdda Signed-off-by: Michael Keppler <Michael.Keppler@gmx.de> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Fri, 24 Apr 2020 20:41:39 +0000 (22:41 +0200)]
Decouple JSch from JGit Core
Motivation: JSch serves as 'default' implementations of the SSH
transport. If a client application does not use it then there is no need
to pull in this dependency.
Move the classes depending on JSch to an OSGi fragment extending the
org.eclipse.jgit bundle and keep them in the same package as before
since moving them to another package would break API. Defer moving them
to a separate package to the next major release.
Add a new feature org.eclipse.jgit.ssh.jsch feature to enable
installation. With that users can now decide which of the ssh client
integrations (JCraft JSch or Apache Mina SSHD) they want to install.
We will remove the JCraft JSch integration in a later step due to the
reasons discussed in bug 520927.
Bug: 553625
Change-Id: I5979c8a9dbbe878a2e8ac0fbfde7230059d74dc2 Also-by: Michael Dardis <git@md-5.net> Signed-off-by: Michael Dardis <git@md-5.net> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com> Signed-off-by: David Ostrovsky <david@ostrovsky.org>
Matthias Sohn [Sun, 26 Apr 2020 22:58:28 +0000 (00:58 +0200)]
Decouple BouncyCastle from JGit Core
Motivation: BouncyCastle serves as 'default' implementation of
the GPG Signer. If a client application does not use it there is no need
to pull in this dependency, especially since BouncyCastle is a large
library.
Move the classes depending on BouncyCastle to an OSGi fragment extending
the org.eclipse.jgit bundle. They are moved to a distinct internal
package in order to avoid split packages. This doesn't break public API
since these classes were already in an internal package before this
change.
Add a new feature org.eclipse.jgit.gpg.bc to enable installation. With
that users can now decide if they want to install it.
Attempts to sign a commit if org.eclipse.jgit.gpg.bc isn't available
will result in ServiceUnavailableException being thrown.
Bug: 559106
Change-Id: I42fd6c00002e17aa9a7be96ae434b538ea86ccf8 Also-by: Michael Dardis <git@md-5.net> Signed-off-by: Michael Dardis <git@md-5.net> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com> Signed-off-by: David Ostrovsky <david@ostrovsky.org>
Thomas Wolf [Fri, 29 May 2020 19:57:37 +0000 (21:57 +0200)]
Verify that the user home directory is valid
If the determination of the user home directory produces a Java File
object with an invalid path, spurious exceptions may occur at the
most inopportune moments anytime later. In the case in the linked bug
report, start-up of EGit failed, leading to numerous user-visible
problems in Eclipse.
So validate the return value of FS.userHomeImpl(). If converting that
File to a Path throws an exception, log the problem and fall back to
Java system property user.home. If that also is not valid, use null.
(A null user home directory is allowed by FS, and calling in Java
new File(null, "some_string") is fine and produces a File relative
to the current working directory.)
Bug: 563739
Change-Id: If9eec0f9a31a45bd815231706285c71b09f8cf56 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Thomas Wolf [Fri, 29 May 2020 21:04:44 +0000 (23:04 +0200)]
WindowCache: conditional JMX setup
Make it possible to programmatically suppress the JMX bean
registration. In EGit it is not needed but can be rather costly
because it occurs during plug-in activation and accesses the
git user config.
Bug: 563740
Change-Id: I07ef7ae2f0208d177d2a03862846a8efe0191956 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Thomas Wolf [Thu, 23 Apr 2020 16:30:19 +0000 (18:30 +0200)]
Builder API to configure SshdSessionFactories
A builder API provides a more convenient way to define a customized
SshdSessionFactory by hiding the subclassing.
Also provide a new interface SshConfigStore to abstract away the
specifics of reading a ssh config file, and provide a way to customize
the concrete ssh config implementation to be used. This facilitates
using an alternate ssh config implementation that may or may not be
based on files.
Change-Id: Ib9038e8ff2a4eb3a9ce7b3554d1450befec8e1e1 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Thomas Wolf [Wed, 13 May 2020 18:06:23 +0000 (20:06 +0200)]
TransportHttp: abort on time-out or on SocketException
Avoid trying other authentication methods on SocketException or on
InterruptedIOException. SocketException is rather fatal, such as
nothing listening on the peer's port, connection reset, or it could
be a connection time-out.
Time-outs enforced by Timeout{Input,Output}Stream may result in
InterruptedIOException being thrown.
In both cases, it makes no sense to try other authentication methods,
and doing so may wrongly report "authentication not supported" or
"cannot open git-upload-pack" or some such instead of reporting a
time-out.
Bug: 563138
Change-Id: I0191b1e784c2471035e550205abd06ec9934fd00 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Thomas Wolf [Mon, 23 Mar 2020 15:55:35 +0000 (16:55 +0100)]
Attributes: fix handling of text=auto in combination with eol
In Git 2.10.0 the interpretation of gitattributes changed or was fixed
such that "* text=auto eol=crlf" would indeed still do auto-detection
of text vs. binary content.[1] Previously this was identical to
"* text eol=crlf", i.e., treating all files as text.
JGit still did the latter, which caused surprises because it changed
binary files.
David Ostrovsky [Sun, 6 Oct 2019 13:28:44 +0000 (15:28 +0200)]
Bazel: Remove superfluous dependencies flagged by unused_deps
Bazel buildtools project includes in addition to buildifier also unused
deps and buildozer utilities, that detect unused dependencies and fix
them by applying the removal to the build files. This change is created
by installing unused_deps from buildtools@HEAD and running:
$ unused_deps //...
and applying the suggested modifications.
Change-Id: Iad74ec2fa719475b29391586f40b13ae30477004 Signed-off-by: David Ostrovsky <david@ostrovsky.org>
* changes:
PackBitmapIndex: Set distance threshold
PackBitmapIndex: Not buffer inflated bitmap in BasePackBitmapIndex
PackBitmapIndex: Remove convertedBitmaps in the Remapper
PackBitmapIndex: Reduce memory usage in GC
PackBitmapIndex: Add AddToBitmapWithCacheFilter class
PackBitmapIndex: Add util methods and builder to BitmapCommit
PackBitmapIndex: Move BitmapCommit to a top-level class
Refactor: Make retriveCompressed an method of the Bitmap class
Yunjie Li [Wed, 29 Apr 2020 22:27:47 +0000 (15:27 -0700)]
PackBitmapIndex: Set distance threshold
Setting the distance threshold to 2000 in PackWriterBitmapPreparer to
reduce memory usage in garbage collection. When the threshold is 0, GC
for the msm repository would use about 37 GB memory to complete. After
setting it to 2000, GC can finish in 75 min with about 10 GB memory.
Change-Id: I39783eeecbae58261c883735499e61ee1cac75fe Signed-off-by: Yunjie Li <yunjieli@google.com>
projects / jgit.git / log