Petr Hrebejk [Mon, 30 Nov 2020 19:19:53 +0000 (20:19 +0100)]
Fix PackInvalidException when fetch and repack run concurrently
We are running several servers with jGit. We need to run repack from
time to time to keep the repos performant. I.e. after push we test how
many small packs are in the repo and when a threshold is reached we run
the repack.
After upgrading jGit version we've found that if someone does the clone
at the time repack is running the clone sometimes (not always) fails
because the repack removes .pack file used by the clone. Server
exception and client error attached.
I've tracked down the cause and it seems to be introduced between jGit
5.2 (which we upgraded from) and 5.3 and being caused by this commit:
Move throw of PackInvalidException outside the catch -
https://github.com/eclipse/jgit/commit/afef866a44cd65fef292c174cad445b3fb526400
The problem is that when the throw was inside of the try block the last
catch block catched the exception and called openFailed(false) method.
It is true that it called it with invalidate = false, which is wrong.
The real problem though is that with the throw outside of the try block
the openFail is not called at all and the fields activeWindows and
activeCopyRawData are not set to 0. Which affects the later called tests
like: if (++activeCopyRawData == 1 && activeWindows == 0).
The fix for this is relatively simple keeping the throw outside of the
try block and still having the invalid field set to true. I did
exhaustive testing of the change running concurrent clones and pushes
indefinitely and with the patch applied it never fails while without the
patch it takes relatively short to get the error.
Matthias Sohn [Wed, 25 Nov 2020 16:00:09 +0000 (17:00 +0100)]
Ensure that GC#deleteOrphans respects pack lock
If pack or index files are guarded by a pack lock (.keep file)
deleteOrphans() should not touch the respective files protected by the
lock file. Otherwise it may interfere with PackInserter concurrently
inserting a new pack file and its index.
The problem was caused by the following race.
All mentioned files are located in "objects/pack/".
File endings relevant in "pack" dir:
.pack
.keep
.idx
.bitmap
When ReceivePack receives a pack file it executes the following steps:
ReceivePack.service():
receivePackAndCheckConnectivity():
receivePack():
receive the pack
parse the pack, returns packLock (.keep file)
PackInserter.flush():
write tmpPck file: "insert_<random>.pack"
write tmpIdx file: "insert_<random>.idx"
real pack name: "pack-<SHA1>.pack"
real index name: "pack-<SHA1>.idx"
atomic rename tmpPack to realPack
atomic rename tmpIdx to tmpIdx
execute commands
unlock pack by removing .keep file
trigger auto gc if enabled
When PackInserter.flush() renames the temporary pack to the final
"pack-xxx.pack" file the temporary pack index file "insert_xxx.idx"
has no matching .pack file with the same base name for a short interval.
If deleteOrphans() ran during that interval it deduced the pack index
file was orphaned. Subsequently the missing pack index caused
MissingObjectExceptions since objects contained in the pack couldn't be
looked up anymore.
Bug: https://bugs.chromium.org/p/gerrit/issues/detail?id=13544
Change-Id: I559c81e4b1d7c487f92a751bd78b987d32c98719 Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Sat, 1 Feb 2020 00:41:52 +0000 (01:41 +0100)]
Merge branch 'stable-5.4' into stable-5.5
* stable-5.4:
Fix string format parameter for invalidRefAdvertisementLine
WindowCache: add metric for cached bytes per repository
pgm daemon: fallback to user and system config if no config specified
WindowCache: add option to use strong refs to reference ByteWindows
Replace usage of ArrayIndexOutOfBoundsException in treewalk
Add config constants for WindowCache configuration options
Matthias Sohn [Sat, 1 Feb 2020 00:28:40 +0000 (01:28 +0100)]
Merge branch 'stable-5.3' into stable-5.4
* stable-5.3:
Fix string format parameter for invalidRefAdvertisementLine
WindowCache: add metric for cached bytes per repository
pgm daemon: fallback to user and system config if no config specified
WindowCache: add option to use strong refs to reference ByteWindows
Replace usage of ArrayIndexOutOfBoundsException in treewalk
Add config constants for WindowCache configuration options
Matthias Sohn [Sat, 1 Feb 2020 00:14:01 +0000 (01:14 +0100)]
Merge branch 'stable-5.2' into stable-5.3
* stable-5.2:
Fix string format parameter for invalidRefAdvertisementLine
WindowCache: add metric for cached bytes per repository
pgm daemon: fallback to user and system config if no config specified
WindowCache: add option to use strong refs to reference ByteWindows
Replace usage of ArrayIndexOutOfBoundsException in treewalk
Add config constants for WindowCache configuration options
David Pursehouse [Fri, 31 Jan 2020 00:12:08 +0000 (09:12 +0900)]
Merge branch 'stable-5.1' into stable-5.2
* stable-5.1:
Fix string format parameter for invalidRefAdvertisementLine
WindowCache: add metric for cached bytes per repository
pgm daemon: fallback to user and system config if no config specified
WindowCache: add option to use strong refs to reference ByteWindows
Change-Id: I741059a1d0d5950ab5bc16ec70352655ee926a24 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
David Pursehouse [Thu, 30 Jan 2020 23:38:24 +0000 (08:38 +0900)]
Fix string format parameter for invalidRefAdvertisementLine
The externalized error message added in f4fc640 ("BasePackConnection:
Check for expected length of ref advertisement", Dec 18, 2019) uses a
malformed string format. Since there is only one formatting argument,
it should be referenced with '{0}' rather than '{1}'.
Change-Id: Ibda864dfb0bb902fe07ae4bba73117b212046e8a Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Matthias Sohn [Fri, 3 Jan 2020 17:16:42 +0000 (18:16 +0100)]
WindowCache: add metric for cached bytes per repository
Since ObjectDatabase and PackFile don't know their repository use the
packfile's grand-grand-parent directory as an identifier for the
repository the packfile resides in.
Remove metric for a repository if the number of cached bytes for the
repository drops to 0 in order to ensure the map of cached bytes per
repository doesn't contain repositories which have no data cached in the
WindowCache.
Change-Id: I969ab8029db0a292e7585cbb36ca0baa797da20b Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Mon, 27 Jan 2020 22:00:57 +0000 (23:00 +0100)]
pgm daemon: fallback to user and system config if no config specified
If a config file is passed via option --config-file then use only the
options defined in that file. This helps to concisely configure the
daemon without side effects from global and system level git configs.
Otherwise fallback to user and system level configs.
Change-Id: I242de248f257579874ad0bfe4882a22502353b1f Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Fri, 13 Dec 2019 00:18:12 +0000 (01:18 +0100)]
WindowCache: add option to use strong refs to reference ByteWindows
Java GC evicts all SoftReferences when the used heap size comes close to
the maximum heap size. This means peaks in heap memory consumption can
flush the complete WindowCache which was observed to have negative
impact on performance of upload-pack in Gerrit.
Hence add a boolean option core.packedGitUseStrongRefs to allow using
strong references to reference packfile pages cached in the WindowCache.
If this option is set to true Java gc can no longer flush the
WindowCache to free memory if the used heap comes close to the maximum
heap size. On the other hand this provides more predictable performance.
Bug: 553573
Change-Id: I9de406293087ab0fa61130c8e0829775762ece8d Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
David Pursehouse [Wed, 15 Jan 2020 11:03:28 +0000 (20:03 +0900)]
Merge branch 'stable-5.1' into stable-5.2
* stable-5.1:
Replace usage of ArrayIndexOutOfBoundsException in treewalk
Add config constants for WindowCache configuration options
Change-Id: I17da3c5183eca536aa2be3972bc5df45c9d75f1b Signed-off-by: David Pursehouse <david.pursehouse@gmail.com> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Patrick Hiesel [Thu, 9 Jan 2020 09:23:12 +0000 (10:23 +0100)]
Replace usage of ArrayIndexOutOfBoundsException in treewalk
Using exceptions during normal operations - for example with the
desire of expanding an array in the failure case - can have a
severe performance impact. When exceptions are instantiated,
a stack trace is collected. Generating stack trace can be expensive.
Compared to that, checking an array for length - even if done many
times - is cheap since this is a check that can run in just a
handful of CPU cycles.
Change-Id: Ifaf10623f6a876c9faecfa44654c9296315adfcb Signed-off-by: Patrick Hiesel <hiesel@google.com> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Thu, 9 Jan 2020 11:32:03 +0000 (12:32 +0100)]
Merge branch 'stable-5.4' into stable-5.5
* stable-5.4:
Fix API problem filters
Fix unclosed resource warning in SmartOutputStream
JschConfigSessionFactory: fix boxing warning
SshSupport#runSshCommand: don't throw exception in finally block
Don't override already managed maven-compiler-plugin version
Remove unused import from CreateFileSnapshotBenchmark
Remove duplicate ignore_optional_problems entry in .classpath
Update maven-site-plugin used by benchmark module to 3.8.2
Add dependency to enable site generation for benchmark module
Ignore warnings for generated source code in
org.eclipse.jgit.benchmark
Fix MBean registration
Enhance WindowCache statistics
Change-Id: I78902d5feecb2c09134b64ec2f3b48b2c3bab37d Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Thu, 9 Jan 2020 10:38:28 +0000 (11:38 +0100)]
Merge branch 'stable-5.3' into stable-5.4
* stable-5.3:
Fix API problem filters
Fix unclosed resource warning in SmartOutputStream
JschConfigSessionFactory: fix boxing warning
SshSupport#runSshCommand: don't throw exception in finally block
Don't override already managed maven-compiler-plugin version
Remove unused import from CreateFileSnapshotBenchmark
Remove duplicate ignore_optional_problems entry in .classpath
Update maven-site-plugin used by benchmark module to 3.8.2
Add dependency to enable site generation for benchmark module
Ignore warnings for generated source code in
org.eclipse.jgit.benchmark
Fix MBean registration
Enhance WindowCache statistics
Change-Id: I1b560b36d169cfa02cc5450ad0fa0bd85f9f42d8 Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Thu, 9 Jan 2020 01:19:03 +0000 (02:19 +0100)]
Merge branch 'stable-5.2' into stable-5.3
* stable-5.2:
Fix API problem filters
Fix unclosed resource warning in SmartOutputStream
JschConfigSessionFactory: fix boxing warning
SshSupport#runSshCommand: don't throw exception in finally block
Don't override already managed maven-compiler-plugin version
Remove unused import from CreateFileSnapshotBenchmark
Remove duplicate ignore_optional_problems entry in .classpath
Update maven-site-plugin used by benchmark module to 3.8.2
Add dependency to enable site generation for benchmark module
Ignore warnings for generated source code in
org.eclipse.jgit.benchmark
Fix MBean registration
Enhance WindowCache statistics
Change-Id: I67a07d92718188bdf7f8a13b83e9f538ecf4b22f Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Sat, 4 Jan 2020 14:44:19 +0000 (15:44 +0100)]
SshSupport#runSshCommand: don't throw exception in finally block
The CommandFailedException which was thrown in finally block is silently
discarded [1]. Refactor this method to throw the exception after the
finally block.
This fixes the warning "Null comparison always yields false: The
variable failure can only be null at this location".
Matthias Sohn [Mon, 16 Dec 2019 14:22:08 +0000 (15:22 +0100)]
Ignore warnings for generated source code in org.eclipse.jgit.benchmark
The source code in the folder .apt_generated is generated by the JMH
code generator, so there's no point in raising any warnings as this
could only be fixed in the upstream code generator.
Change-Id: I882888e7bf924f9ae74182598fcb91671a5c9818 Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Sat, 30 Nov 2019 02:38:13 +0000 (03:38 +0100)]
Enhance WindowCache statistics
Add the following statistics
- cache hit count and hit ratio
- cache miss count and miss ratio
- count of successful and failed loads
- rate of failed loads
- load, eviction and request count
- average and total load time
Use LongAdder instead of AtomicLong to implement counters in order to
improve scalability.
Optionally expose these metrics via JMX, they are registered with the
platform MBean server if the config option jmx.WindowCacheStats = true
in the user or system level git config.
Bug: 553573
Change-Id: Ia2d5246ef69b9c2bd594a23934424bc5800774aa Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Thomas Wolf [Tue, 12 Nov 2019 08:38:04 +0000 (09:38 +0100)]
Fix NPE in SystemReader in tests
SystemReader.updateAll() must _not_ test whether the file exists. In
tests at least there are FileBasedConfigs with a null file. Test
configs should (and do) override isOutdated() to deal with this case.
Change-Id: I56303fe0d56afeb9f2203ee807a92c5dcf3809e9 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Matthias Sohn [Mon, 7 Oct 2019 17:05:07 +0000 (19:05 +0200)]
Prepend hostname to subsection used to store file timestamp resolution
This ensures the measured filesystem timestamp resolution will be only
used on the machine where it was measured and avoid errors in case the
~/.jgitconfig file is copied to another machine.
Bug: 551850
Change-Id: Iff2a11be62ca94c3bbe4a955182988dc50852f9f Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Mon, 7 Oct 2019 15:58:56 +0000 (17:58 +0200)]
Store filesystem timestamp resolution in extra jgit config
This avoids polluting hand-crafted user level config with
auto-configured options which might disturb in environments where
the user level config is replicated between different machines.
Add a jgit config as parent of the system level config. Persist
measured timestamp resolutions always in this jgit config and read it
via the user global config. This has the effect that auto-configured
timestamp resolution will be used by default and can be overridden in
either the system level or user level config.
Store the jgit config under the XDG_CONFIG_HOME directory following the
XDG base directory specification [1] in order to ensure that we have
write permissions to persist the file. This has the effect that each OS
user will use its jgit config since they typically use different
XDG_CONFIG_HOME directories.
If the environment variable XDG_CONFIG_HOME is defined the jgit config
file is located at $XDG_CONFIG_HOME/jgit/config otherwise the default is
~/.config/jgit/config.
If you want to avoid redundant measurement for different OS users
manually copy the values measured and auto-configured for one OS user to
the system level git config.
Thomas Wolf [Sat, 21 Sep 2019 12:38:22 +0000 (14:38 +0200)]
SystemReader: extract updating config and its parents if outdated
Change-Id: Ia77f442e47c5670c2d6d279ba862044016aabd86 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Tue, 5 Nov 2019 15:10:48 +0000 (16:10 +0100)]
Merge branch 'stable-5.4' into stable-5.5
* stable-5.4:
Run JMH benchmarks using bazel
Benchmark for creating files and FileSnapshots
Implement benchmark for looking up FileStore of a given Path
JMH benchmark for SimpleLruCache
Update API problem filters
Remove unused API problem filters
Silence API errors for new API added since 5.1.0
Change-Id: I071536d630a95e89f5bbbf965a1571b9f5eb81ee Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Tue, 5 Nov 2019 14:42:14 +0000 (15:42 +0100)]
Merge branch 'stable-5.3' into stable-5.4
* stable-5.3:
Run JMH benchmarks using bazel
Benchmark for creating files and FileSnapshots
Implement benchmark for looking up FileStore of a given Path
JMH benchmark for SimpleLruCache
Update API problem filters
Remove unused API problem filters
Silence API errors for new API added since 5.1.0
Change-Id: Ib735c4039e24ec8b045ae2cc81df1e9e5c9fa996 Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Tue, 5 Nov 2019 14:24:54 +0000 (15:24 +0100)]
Merge branch 'stable-5.2' into stable-5.3
* stable-5.2:
Run JMH benchmarks using bazel
Benchmark for creating files and FileSnapshots
Implement benchmark for looking up FileStore of a given Path
JMH benchmark for SimpleLruCache
Update API problem filters
Remove unused API problem filters
Silence API errors for new API added since 5.1.0
Change-Id: I00615958ab6fbdff601e87a9792aba5606cda12a Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Tue, 5 Nov 2019 14:07:39 +0000 (15:07 +0100)]
Merge branch 'stable-5.1' into stable-5.2
* stable-5.1:
Run JMH benchmarks using bazel
Benchmark for creating files and FileSnapshots
Implement benchmark for looking up FileStore of a given Path
JMH benchmark for SimpleLruCache
Remove unused API problem filters
Silence API errors for new API added since 5.1.0
Change-Id: If91c55a192d3b2c441d9c8d414f2e24a7261b1b6 Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Sat, 3 Aug 2019 10:02:34 +0000 (12:02 +0200)]
JMH benchmark for SimpleLruCache
See [1] for JMH documentation and [2] how to use JMH in Eclipse.
The benchmarks pom currently cannot use the JGit parent pom due to an
ecj bug [3] regarding annotation processing. Hence for now do not
inherit from the JGit parent pom and copy the compiler plugin
configuration for javac from the parent pom.
After running the Maven build the benchmark can be run using Maven:
Matthias Sohn [Wed, 2 Oct 2019 22:47:05 +0000 (00:47 +0200)]
Merge branch 'stable-5.4' into stable-5.5
* stable-5.4:
Prepare 5.3.7-SNAPSHOT builds
JGit v5.3.6.201910020505-r
Prepare 5.1.13-SNAPSHOT builds
JGit v5.1.12.201910011832-r
Do not rely on ArrayIndexOutOfBoundsException to detect end of input
Change-Id: Ia1070fd170651ce827bc6b876c6764a44ffe60eb Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Matthias Sohn [Wed, 2 Oct 2019 09:36:05 +0000 (11:36 +0200)]
Merge branch 'stable-5.3' into stable-5.4
* stable-5.3:
Prepare 5.3.7-SNAPSHOT builds
JGit v5.3.6.201910020505-r
Prepare 5.1.13-SNAPSHOT builds
JGit v5.1.12.201910011832-r
Do not rely on ArrayIndexOutOfBoundsException to detect end of input
Change-Id: Ia621d06a9489ee276c793de9dd4a77f4ff19e2ac Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
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