David Pursehouse [Wed, 12 Sep 2018 06:55:07 +0000 (15:55 +0900)]
Merge branch 'stable-4.8' into stable-4.9
* stable-4.8:
Fix NoSuchFileException during directory cleanup in RefDirectory
Externalize warning message in RefDirectory.delete()
Suppress warning for trying to delete non-empty directory
Change-Id: I5e6cc35f3673545e7ff857e6ed0bcd2c44e50316 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
David Pursehouse [Wed, 12 Sep 2018 05:05:46 +0000 (14:05 +0900)]
Merge branch 'stable-4.7' into stable-4.8
* stable-4.7:
Fix NoSuchFileException during directory cleanup in RefDirectory
Externalize warning message in RefDirectory.delete()
Suppress warning for trying to delete non-empty directory
Change-Id: I9ec6352b5ff57aa1a3380079dc9165890cc76d49 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Matthias Sohn [Thu, 23 Aug 2018 09:44:28 +0000 (11:44 +0200)]
Externalize warning message in RefDirectory.delete()
Change-Id: Icec16c01853a3f5ea016d454b3d48624498efcce Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
(cherry picked from commit 5e68fe245fb97f38620ea683dbeab724bf86da4c) Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Thomas Wolf [Sun, 19 Aug 2018 18:48:06 +0000 (20:48 +0200)]
Suppress warning for trying to delete non-empty directory
This is actually a fairly common occurrence; deleting the parent
directories can work only if the file deleted was the last one
in the directory.
Bug: 537872
Change-Id: I86d1d45e1e2631332025ff24af8dfd46c9725711 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
(cherry picked from commit d9e767b431eae7978613cc8e0ade7467ec04376c) Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Matthias Sohn [Sun, 26 Aug 2018 17:44:29 +0000 (19:44 +0200)]
Fix atomic lock file creation on NFS
FS_POSIX.createNewFile(File) failed to properly implement atomic file
creation on NFS using the algorithm [1]:
- name of the hard link must be unique to prevent that two processes
using different NFS clients try to create the same link. This would
render nlink useless to detect if there was a race.
- the hard link must be retained for the lifetime of the file since we
don't know when the state of the involved NFS clients will be
synchronized. This depends on NFS configuration options.
To fix these issues we need to change the signature of createNewFile
which would break API. Hence deprecate the old method
FS.createNewFile(File) and add a new method createNewFileAtomic(File).
The new method returns a LockToken which needs to be retained by the
caller (LockFile) until all involved NFS clients synchronized their
state. Since we don't know when the NFS caches are synchronized we need
to retain the token until the corresponding file is no longer needed.
The LockToken must be closed after the LockFile using it has been
committed or unlocked. On Posix, if core.supportsAtomicCreateNewFile =
false this will delete the hard link which guarded the atomic creation
of the file. When acquiring the lock fails ensure that the hard link is
removed.
[1] https://www.time-travellers.org/shane/papers/NFS_considered_harmful.html
also see file creation flag O_EXCL in
http://man7.org/linux/man-pages/man2/open.2.html
Change-Id: I84fcb16143a5f877e9b08c6ee0ff8fa4ea68a90d Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Fix handling of option core.supportsAtomicCreateNewFile
When core.supportsAtomicCreateNewFile was set to false and the
repository was located on a filesystem which doesn't support the file
attribute "unix:nlink" then FS_POSIX#createNewFile may report an error
even if everything was ok. Modify FS_POSIX#createNewFile to silently
ignore this situation. An example of such a filesystem is sshfs where
reading "unix:nlink" always returns 1 (instead of throwing a exception).
Bug: 537969
Change-Id: I6deda7672fa7945efa8706ea1cd652272604ff19 Also-by: Thomas Wolf <thomas.wolf@paranor.ch>
GC: Avoid logging errors when deleting non-empty folders
I88304d34c and Ia555bce00 modified the way errors are handled when
trying to delete non-empty reference folders. Before, this error was
silently ignored as it was considered an expected output. Now, every
failed folder delete is logged which can be noisy.
Ignore the DirectoryNotEmptyException but log any other error avoiding
deletion of an eligible folder.
David Pursehouse [Fri, 31 Aug 2018 04:08:29 +0000 (13:08 +0900)]
Merge branch 'stable-4.8' into stable-4.9
* stable-4.8:
Bazel: Use hyphen instead of underscore in external repository names
Bazel: Format all build files with buildifier 0.15.0
ChangeIdUtilTest: Remove unused notestCommitDashV
Change-Id: I17436237cd66ca1c2800ad5ab0142f4a2bc07328 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
David Pursehouse [Fri, 31 Aug 2018 00:24:57 +0000 (09:24 +0900)]
Merge branch 'stable-4.7' into stable-4.8
* stable-4.7:
Bazel: Use hyphen instead of underscore in external repository names
Bazel: Format all build files with buildifier 0.15.0
ChangeIdUtilTest: Remove unused notestCommitDashV
Change-Id: I414ade902dc38b696c566dd604000e3d289f3973 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
David Pursehouse [Wed, 29 Aug 2018 23:48:41 +0000 (08:48 +0900)]
Bazel: Use hyphen instead of underscore in external repository names
Recent Bazel versions support the hyphen character in external
repository names. On the Gerrit project, the repository names
were harmonized to consistently use hyphen.
As a side effect, it is no longer possible to build jgit from source
in the gerrit tree, due to the different repository names.
Rename the dependencies to use hyphens, consistent with gerrit.
Change-Id: Ideebd858ddd3f0e6f765643001642dfb6c12441f Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
David Pursehouse [Sat, 30 Sep 2017 09:56:42 +0000 (10:56 +0100)]
ChangeIdUtilTest: Remove unused notestCommitDashV
This test was never being run. Since it was introduced it was
named "notest.." which meant it didn't run with JUnit3, and
since it is not annotated @Test it also doesn't run with JUnit4.
When compiling with Bazel 0.6.0, error-prone raises an error
that the public method is not annotated with @Ignore or @Test.
Given that the test has never been run anyway, we can just
remove it.
Bug: 525415
Change-Id: Ie9a54f89fe42e0c201f547ff54ff1d419ce37864 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Thomas Wolf [Sun, 19 Aug 2018 18:43:50 +0000 (20:43 +0200)]
Fix fetching with duplicate ref updates
If packed refs are used, duplicate updates result in an exception
because JGit tries to lock the same lock file twice. With non-atomic
ref updates, this used to work, since the same ref would simply be
locked and updated twice in succession.
Let's be more lenient in this case and remove duplicates before
trying to do the ref updates. Silently skip duplicate updates
for the same ref, if they both would update the ref to the same
object ID. (If they don't, behavior is undefined anyway, and we
still throw an exception.)
Add a test that results in a duplicate ref update for a tag.
Bug: 529400
Change-Id: Ide97f20b219646ac24c22e28de0c194a29cb62a5 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Marc Strapetz [Sat, 30 Dec 2017 10:33:41 +0000 (11:33 +0100)]
Fetch(Process): should tolerate duplicate refspecs
Bug: 529314
Change-Id: I91eaeda8a988d4786908fba6de00478cfc47a2a2 Signed-off-by: Marc Strapetz <marc.strapetz@syntevo.com> Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Marc Strapetz [Sat, 30 Dec 2017 10:12:14 +0000 (11:12 +0100)]
FetchCommandTest: test add/update/delete fetch
Change-Id: I2442394fb7eae5b3715779555477dd27b274ee83 Signed-off-by: Marc Strapetz <marc.strapetz@syntevo.com> Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Hugo Arès [Wed, 15 Aug 2018 13:54:29 +0000 (09:54 -0400)]
Fix GC run in foreground to not use executor
Since I3870cadb4, GC task was always delegated to an executor even when
background option was set to false. This was an issue because if more
than one GC object was instantiated and executed in parallel, only one GC
was actually running because of the single thread executor.
Change-Id: I8c587d22d63c1601b7d75914692644a385cd86d6 Signed-off-by: Hugo Arès <hugo.ares@ericsson.com>
Matthias Sohn [Fri, 27 Jul 2018 08:51:58 +0000 (10:51 +0200)]
Merge branch 'stable-4.8' into stable-4.9
* stable-4.8:
Prepare 4.7.3-SNAPSHOT builds
JGit v4.7.2.201807261330-r
Delete all loose refs empty directories
Use java.nio to delete path to get detailed errors
GC: Remove empty references folders
Do not ignore path deletion errors
Change-Id: I6ab2b951dd94a9fc1c4f5283847a3e2ec37d0895 Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
David Pursehouse [Fri, 27 Jul 2018 07:22:51 +0000 (08:22 +0100)]
Merge branch 'stable-4.7' into stable-4.8
* stable-4.7:
Prepare 4.7.3-SNAPSHOT builds
JGit v4.7.2.201807261330-r
Delete all loose refs empty directories
Use java.nio to delete path to get detailed errors
GC: Remove empty references folders
Do not ignore path deletion errors
Change-Id: Iadc8275fbaa3d6f7d08a96ab66d49f392f6aab78 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
After packaging references, the folders containing these references are
not deleted. In a busy repository, this causes operations to slow down
as traversing the references tree becomes longer.
Delete empty reference folders after the loose references have been
packed.
To avoid deleting a folder that was just created by another concurrent
operation, only delete folders that were not modified in the last 30
seconds.
Marco Miller [Thu, 21 Jun 2018 18:18:48 +0000 (14:18 -0400)]
ResolveMerger: Fix encoding with string; use bytes
This change fixes the issue [1]. Before this fix, a merge involving
the caching of consecutive yet similar filenames with Norwegian
characters [2] used to throw an IllegalStateException: Duplicate
stages not allowed. This was caused by inaccurate decoding of the
filenames, using string values assuming default encoding. In the
toString method of DirCacheEntry, used before through getPathString,
UTF-8 encoding is used, but the end result becomes default encoding,
through Object's default toString usage. The special characters in
those two consecutive (particular) filenames [2] were becoming the
very same decoded /single character, lending consecutive -but then
identical- filenames. Thus the perceived duplicate 0-staging of the
file(s).
Replace getPathString usage with getRawPath for this specific case,
or use byte array representations of cached entries instead of string.
Adding a test for this change is not possible, as there is no known
way to change the default encoding for filenames such as [2] (e.g.).
JGitTestUtil does write file contents through UTF-8, but encoding like
so does not apply to the actual file name. Hence there is no way to
create files with names properly made of special characters such as
[2]'s. And the test that is necessary for this case assumes such
Norwegian (or similar characters) filenames. Changing the default
locale programmatically in a test has no effect either. And changing
the LANG value passed to the JVM is only possible upon starting it.
Dave Borowitz [Fri, 5 Jan 2018 18:02:47 +0000 (13:02 -0500)]
Ensure DirectoryStream is closed promptly
From the javadoc for Files.list:
"The returned stream encapsulates a DirectoryStream. If timely disposal
of file system resources is required, the try-with-resources construct
should be used to ensure that the stream's close method is invoked
after the stream operations are completed."
This is the only call to Files#newDirectoryStream that is not already in
a try-with-resources.
On a local non-NFS filesystem the .git/config file will be orphaned if
it is replaced by a new process while the current process is reading the
old file. The current process successfully continues to read the
orphaned file until it closes the file handle.
Since NFS servers do not keep track of open files, instead of orphaning
the old .git/config file, such a replacement on an NFS filesystem will
instead cause the old file to be garbage collected (deleted). A stale
file handle exception will be raised on NFS clients if the file is
garbage collected (deleted) on the server while it is being read. Since
we no longer have access to the old file in these cases, the previous
code would just fail. However, in these cases, reopening the file and
rereading it will succeed (since it will open the new replacement file).
Since retrying the read is a viable strategy to deal with stale file
handles on the .git/config file, implement such a strategy.
Since it is possible that the .git/config file could be replaced again
while rereading it, loop on stale file handle exceptions, up to 5 extra
times, trying to read the .git/config file again, until we either read
the new file, or find that the file no longer exists. The limit of 5 is
arbitrary, and provides a safe upper bounds to prevent infinite loops
consuming resources in a potential unforeseen persistent error
condition.
Change-Id: I6901157b9dfdbd3013360ebe3eb40af147a8c626 Signed-off-by: Nasser Grainawi <nasser@codeaurora.org> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Thomas Wolf [Wed, 14 Feb 2018 12:39:28 +0000 (13:39 +0100)]
Fix ssh host name handling for Jsch
If we give Jsch access to the ssh config file, we must _not_ resolve
the host name from the alias. Instead we must give the alias (i.e.,
the host name as is in the URI) to Jsch, so that it finds the same
ssh config entry.
Otherwise if the hostname in the URI, which is taken as an alias in
ssh config ("Host" line), is unequal to the "Hostname" line, and
there happens to be another ssh config entry with that translated
host name as alias, Jsch will pick up that second entry, and we end
up with a strange mixture of both.
Add tests for this case.
Bug: 531118
Change-Id: I249d8c073b0190ed110a69dca5b9be2a749822c3 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Thomas Wolf [Wed, 14 Feb 2018 12:05:17 +0000 (13:05 +0100)]
Jsch overrides the port in the URI with the one in ~/.ssh/config
Jsch unconditionally overwrites the port from the ssh config
file (if a port is specified there), even if the URI explicitly does
give a different port.
Fix this, and add tests.
Change-Id: I7b014543c7ece26270e366db39d7647f82d64f0d Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Thomas Wolf [Fri, 12 Jan 2018 11:51:22 +0000 (12:51 +0100)]
Revert handling of ssh IdentityFile to pre-4.9 behavior
Jsch caches keys (aka identities) specified in ~/.ssh/config via
IndentityFile only for the current Jsch Session. This results in
multiple password prompts for successive sessions.
Do the handling of IdentityFile exclusively in JGit, as it was before
4.9. JGit uses different Jsch instances per host and caches the
IdentityFile there, allowing it to be re-used in different sessions
for the same host.
* Add comments to explain this.
* Move the JschBugFixingConfig from OpenSshConfig to
JschConfigSessionFactory to have all these Jsch work-arounds
in one place.
* Make that config hide the IdentityFile config from Jsch to avoid
that Jsch overrides the JGit behavior.
Bug: 529173
Change-Id: Ib36c34a2921ba736adeb64de71323c2b91151613 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Dave Borowitz [Thu, 21 Dec 2017 14:46:55 +0000 (09:46 -0500)]
Make PackInserter public
The intent with the setCompressionLevel and checkExisting methods (which
are already public) is for callers to be able to call them, but they
can't do that if the class itself is not public.
Dave Borowitz [Wed, 20 Dec 2017 17:36:03 +0000 (12:36 -0500)]
PackInserter: Ensure objects are written at the end of the pack
When interleaving reads and writes from an unflushed pack, we forgot to
reset the file pointer back to the end of the file before writing more
new objects. This had at least two unfortunate effects:
* The pack data was potentially corrupt, since we could overwrite
previous portions of the file willy-nilly.
* The CountingOutputStream would report more bytes read than the size
of the file, which stored the wrong PackedObjectInfo, which would
cause EOFs during reading.
We already had a test in PackInserterTest which was supposed to catch
bugs like this, by interleaving reads and writes. Unfortunately, it
didn't catch the bug, since as an implementation detail we always read a
full buffer's worth of data from the file when inflating during
readback. If the size of the file was less than the offset of the object
we were reading back plus one buffer (8192 bytes), we would completely
accidentally end up back in the right place in the file.
So, add another test for this case where we read back a small object
positioned before a large object. Before the fix, this test exhibited
exactly the "Unexpected EOF" error reported at crbug.com/gerrit/7668.
Thomas Wolf [Thu, 14 Dec 2017 12:24:00 +0000 (13:24 +0100)]
Write packed-refs directly when cloning
When we are cloning we have no refs at all yet, and there cannot
(or at least should not) be any other thread doing something with
refs yet.
Locking loose refs is thus not needed, since there are no loose
refs yet and nothing should be trying to create them concurrently.
Let's skip the whole loose ref locking when we are cloning a repository.
As a result, JGit will write the refs directly to the packed-refs
file, and will not create the refs/remotes/ directories nor the
lock files underneath when cloning and packed refs are used. Since
no lock files are created, any problems on case-insensitive file
systems with tag or branch names that differ only in case are avoided
during cloning.
Detect if we are cloning based on the following heuristics:
* HEAD is a dangling symref
* There is no loose ref
* There is no packed-refs file
Note, however, that there may still be problems with such tag or
branch names later on. This is primarily a five-minutes-past-twelve
stop-gap measure to resolve the referenced bug, which affects the
Oxygen.2 release.
Bug: 528497
Change-Id: I57860c29c210568165276a123b855e462b6a107a Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch> Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
David Pursehouse [Thu, 14 Dec 2017 23:50:28 +0000 (08:50 +0900)]
Config: Remove the include functionality
The Config class must be safe to run against untrusted input files.
Reading arbitrary local system paths using include.path is risky for
servers, including Gerrit Code Review.
This was fixed on master [1] by making "readIncludedConfig" a noop
by default. This allows only FileBasedConfig, which originated from
local disk, to read local system paths.
However, the "readIncludedConfig" method was only introduced in [2]
which was needed by [3], both of which are only on the master branch.
On the stable branch only Config supports includes. Therefore this
commit simply disables the include functionality.
InMemoryRepository: Make inner class MemObjDatabase static
FindBugs reports:
This class is an inner class, but does not use its embedded reference
to the object which created it. This reference makes the instances
of the class larger, and may keep the reference to the creator object
alive longer than necessary. If possible, the class should be made
static.
Change-Id: I9f49de32b4cd81b7ef1239b390353689263bf66e Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Dmitry Pavlenko [Thu, 7 Dec 2017 18:36:35 +0000 (19:36 +0100)]
Fix IllegalThreadStateException if stderr closed without exiting
If some process executed by FS#readPipe lived for a while after
closing stderr, FS#GobblerThread#run failed with an
IllegalThreadStateException exception when accessing p.exitValue()
for the process which is still alive.
Add Process#waitFor calls to wait for the process completion.
Pretty printing the response is useful for human readers, but most
(if not all) of the time, the response will be read by programs.
Remove it to avoid the additional overhead of the formatting and
extra bytes in the response. Adjust the test accordingly.
Note that LfsProtocolServlet already doesn't use pretty printing,
so this change makes FileLfsServlet's behavior consistent. In fact,
both classes now have duplicate Gson handling; this will be cleaned
up in a separate change.
Change-Id: I113a23403f9222f16e2c0ddf39461398b721d064 Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
This class is an inner class, but does not use its embedded reference
to the object which created it. This reference makes the instances
of the class larger, and may keep the reference to the creator object
alive longer than necessary. If possible, the class should be made
static.
Change-Id: I245e44678166176de0cfb275e22ddd159f88e0bd Signed-off-by: David Pursehouse <david.pursehouse@gmail.com>
Matthias Sohn [Sun, 3 Dec 2017 12:54:28 +0000 (13:54 +0100)]
Silence API warnings for reintroduced ResolveMerger#processEntry
This was silenced before but suppression was unintentionally lost in
merge commit 6858339c1e2878d5c5dc6cc9b422f9802be950ae.
This method was removed in 4.9.0 and reintroduced in 4.9.1 to avoid
breaking EMF compare versions which were built against older versions.
When a GC operation is interrupted, temporary packs and indexes can be
left on the pack folder. In big, busy repositories this can lead to
significant amounts of wasted disk space if this interruption is done
with a certain frequency.
Remove stale temporary packs and indexes at the end of the GC process so
they do not accumulate. To avoid interfering with a possible concurrent
JGit GC process in the same repository, only delete temporary files that
are older than one day.
When running on NFS there was a chance that JGits LockFile
semantic is broken because File#createNewFile() may allow
multiple clients to create the same file in parallel. This
change provides a fix which is only used when the new config
option core.supportsAtomicCreateNewFile is set to false. The
default for this option is true. This option can only be set in the
global or the system config file. The repository config file is not
taken into account in this case.
If the config option core.supportsAtomicCreateNewFile is true
then File#createNewFile() is trusted and the behaviour doesn't
change.
But if core.supportsAtomicCreateNewFile is set to false then after
successful creation of the lock file a hardlink to that lock file is
created and the attribute nlink of the lock file is checked to be 2. If
multiple clients manage to create the same lock file nlink would be
greater than 2 showing the error.
This expensive workaround is described in
https://www.time-travellers.org/shane/papers/NFS_considered_harmful.html
section III.d) "Exclusive File Creation"
Honor trustFolderStats also when reading packed-refs
Then list of packed refs was cached in RefDirectory based on mtime of
the packed-refs file. This may fail on NFS when attributes are cached.
A cached mtime of the packed-refs file could cause JGit to trust the
cached content of this file and to overlook that the file is modified.
Honor the config option trustFolderStats and always read the packed-refs
content if the option is false. By default this option is set to true
and this fix is not active.
Thomas Wolf [Sat, 11 Nov 2017 10:41:10 +0000 (11:41 +0100)]
Yet another work-around for a Jsch bug: timeouts
Jsch 0.1.54 passes on the values from ~/.ssh/config for
"ServerAliveInterval" and "ConnectTimeout" as read from
the config file to java.net.Socket.setSoTimeout(). That
method expects milliseconds, but the values in the config
file are seconds!
The missing conversion in Jsch means that the timeout is
set way too low, and if the server doesn't respond within
that very short time frame, Jsch kills the connection and
then throws an exception with a message such as "session is
down" or "timeout in waiting for rekeying process".
As a work-around, do the conversion to milliseconds in the
Jsch-facing Config interface of OpenSshConfig. That way Jsch
already gets these values as milliseconds.
Bug: 526867
Change-Id: Ibc9b93f7722fffe10f3e770dfe7fdabfb3b97e74 Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
Thomas Wolf [Tue, 7 Nov 2017 07:19:56 +0000 (08:19 +0100)]
Work around a Jsch bug: ensure the user name is set from URI
JSch unconditionally overrides the user name given in the connection
URI by the one found in ~/.ssh/config (if that does specify one for
the used host). If the SSH config file has a different user name,
we'll end up using the wrong name, which typically results in an
authentication failure or in Eclipse/EGit asking for a password for
the wrong user.
Unfortunately there is no way to prevent or circumvent this Jsch
behavior up front; it occurs already in the Session constructor at
com.jcraft.jsch.Session() and the Session.applyConfig() method. And
while there is a Session.setUserName() that would enable us to correct
this, that latter method has package visibility only.
So resort to reflection to invoke that setUserName() method to ensure
that Jsch uses the user name from the URI, if there is one.
Bug: 526778
Change-Id: Ia327099b5210a037380b2750a7fd76ff25c41a5a Signed-off-by: Thomas Wolf <thomas.wolf@paranor.ch>
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