Replace update repository function in some places (#34566)

`UpdateAllCols` is dangerous, the columns should be updated when
necessary.

This PR replaces some `updateRepository` invokes to reduce possible
problems and wrongly updated time. Some parts have been fixed in #34388,
but some are hidden in the function `updateRepository`. Alternatively,
using `UpdateRepositoryColsNoAutoTime` to update the changed columns.

Some `UpdateRepoSize` invokes are duplicated, so they will be removed
when extracting from `updateRepository`.

11 files changed, 121 insertions, 57 deletions

diff --git a/models/issues/pull.go b/models/issues/pull.go
index e65b214dab..0ff32e2473 100644
--- a/models/issues/pull.go
+++ b/models/issues/pull.go
@@ -649,12 +649,6 @@ func GetAllUnmergedAgitPullRequestByPoster(ctx context.Context, uid int64) ([]*P
 	return pulls, err
 }
 
-// Update updates all fields of pull request.
-func (pr *PullRequest) Update(ctx context.Context) error {
-	_, err := db.GetEngine(ctx).ID(pr.ID).AllCols().Update(pr)
-	return err
-}
-
 // UpdateCols updates specific fields of pull request.
 func (pr *PullRequest) UpdateCols(ctx context.Context, cols ...string) error {
 	_, err := db.GetEngine(ctx).ID(pr.ID).Cols(cols...).Update(pr)
diff --git a/models/issues/pull_test.go b/models/issues/pull_test.go
index 53898cb42e..39efaa5792 100644
--- a/models/issues/pull_test.go
+++ b/models/issues/pull_test.go
@@ -248,19 +248,6 @@ func TestGetPullRequestByIssueID(t *testing.T) {
 	assert.True(t, issues_model.IsErrPullRequestNotExist(err))
 }
 
-func TestPullRequest_Update(t *testing.T) {
-	assert.NoError(t, unittest.PrepareTestDatabase())
-	pr := unittest.AssertExistsAndLoadBean(t, &issues_model.PullRequest{ID: 1})
-	pr.BaseBranch = "baseBranch"
-	pr.HeadBranch = "headBranch"
-	pr.Update(db.DefaultContext)
-
-	pr = unittest.AssertExistsAndLoadBean(t, &issues_model.PullRequest{ID: pr.ID})
-	assert.Equal(t, "baseBranch", pr.BaseBranch)
-	assert.Equal(t, "headBranch", pr.HeadBranch)
-	unittest.CheckConsistencyFor(t, pr)
-}
-
 func TestPullRequest_UpdateCols(t *testing.T) {
 	assert.NoError(t, unittest.PrepareTestDatabase())
 	pr := &issues_model.PullRequest{
diff --git a/models/repo/release.go b/models/repo/release.go
index 06cfa37342..59f4caf5aa 100644
--- a/models/repo/release.go
+++ b/models/repo/release.go
@@ -180,7 +180,7 @@ func AddReleaseAttachments(ctx context.Context, releaseID int64, attachmentUUIDs
 		}
 		attachments[i].ReleaseID = releaseID
 		// No assign value could be 0, so ignore AllCols().
-		if _, err = db.GetEngine(ctx).ID(attachments[i].ID).Update(attachments[i]); err != nil {
+		if _, err = db.GetEngine(ctx).ID(attachments[i].ID).Cols("release_id").Update(attachments[i]); err != nil {
 			return fmt.Errorf("update attachment [%d]: %w", attachments[i].ID, err)
 		}
 	}
diff --git a/models/repo/update.go b/models/repo/update.go
index 8a15477a80..f82ff7c76c 100644
--- a/models/repo/update.go
+++ b/models/repo/update.go
@@ -42,12 +42,18 @@ func UpdateRepositoryUpdatedTime(ctx context.Context, repoID int64, updateTime t
 
 // UpdateRepositoryColsWithAutoTime updates repository's columns
 func UpdateRepositoryColsWithAutoTime(ctx context.Context, repo *Repository, cols ...string) error {
+	if len(cols) == 0 {
+		return nil
+	}
 	_, err := db.GetEngine(ctx).ID(repo.ID).Cols(cols...).Update(repo)
 	return err
 }
 
 // UpdateRepositoryColsNoAutoTime updates repository's columns and but applies time change automatically
 func UpdateRepositoryColsNoAutoTime(ctx context.Context, repo *Repository, cols ...string) error {
+	if len(cols) == 0 {
+		return nil
+	}
 	_, err := db.GetEngine(ctx).ID(repo.ID).Cols(cols...).NoAutoTime().Update(repo)
 	return err
 }
diff --git a/routers/web/repo/wiki_test.go b/routers/web/repo/wiki_test.go
index d0139f6613..73f9970a07 100644
--- a/routers/web/repo/wiki_test.go
+++ b/routers/web/repo/wiki_test.go
@@ -245,7 +245,12 @@ func TestDefaultWikiBranch(t *testing.T) {
 	assert.NoError(t, wiki_service.ChangeDefaultWikiBranch(db.DefaultContext, repoWithNoWiki, "main"))
 
 	// repo with wiki
-	assert.NoError(t, repo_model.UpdateRepositoryColsNoAutoTime(db.DefaultContext, &repo_model.Repository{ID: 1, DefaultWikiBranch: "wrong-branch"}))
+	assert.NoError(t, repo_model.UpdateRepositoryColsNoAutoTime(
+		db.DefaultContext,
+		&repo_model.Repository{ID: 1, DefaultWikiBranch: "wrong-branch"},
+		"default_wiki_branch",
+	),
+	)
 
 	ctx, _ := contexttest.MockContext(t, "user2/repo1/wiki")
 	ctx.SetPathParam("*", "Home")
diff --git a/services/repository/adopt.go b/services/repository/adopt.go
index 3b958e0d4c..2bd1c55de4 100644
--- a/services/repository/adopt.go
+++ b/services/repository/adopt.go
@@ -196,8 +196,13 @@ func adoptRepository(ctx context.Context, repo *repo_model.Repository, defaultBr
 			return fmt.Errorf("setDefaultBranch: %w", err)
 		}
 	}
-	if err = updateRepository(ctx, repo, false); err != nil {
-		return fmt.Errorf("updateRepository: %w", err)
+
+	if err = repo_model.UpdateRepositoryColsNoAutoTime(ctx, repo, "is_empty", "default_branch"); err != nil {
+		return fmt.Errorf("UpdateRepositoryCols: %w", err)
+	}
+
+	if err = repo_module.UpdateRepoSize(ctx, repo); err != nil {
+		log.Error("Failed to update size for repository: %v", err)
 	}
 
 	return nil
diff --git a/services/repository/create.go b/services/repository/create.go
index 83d7d84c08..6f918b2d24 100644
--- a/services/repository/create.go
+++ b/services/repository/create.go
@@ -191,10 +191,14 @@ func initRepository(ctx context.Context, u *user_model.User, repo *repo_model.Re
 		}
 	}
 
-	if err = UpdateRepository(ctx, repo, false); err != nil {
+	if err = repo_model.UpdateRepositoryColsNoAutoTime(ctx, repo, "is_empty", "default_branch", "default_wiki_branch"); err != nil {
 		return fmt.Errorf("updateRepository: %w", err)
 	}
 
+	if err = repo_module.UpdateRepoSize(ctx, repo); err != nil {
+		log.Error("Failed to update size for repository: %v", err)
+	}
+
 	return nil
 }
 
diff --git a/services/repository/fork.go b/services/repository/fork.go
index bd1554f163..d0568e6072 100644
--- a/services/repository/fork.go
+++ b/services/repository/fork.go
@@ -209,7 +209,7 @@ func ForkRepository(ctx context.Context, doer, owner *user_model.User, opts Fork
 
 // ConvertForkToNormalRepository convert the provided repo from a forked repo to normal repo
 func ConvertForkToNormalRepository(ctx context.Context, repo *repo_model.Repository) error {
-	err := db.WithTx(ctx, func(ctx context.Context) error {
+	return db.WithTx(ctx, func(ctx context.Context) error {
 		repo, err := repo_model.GetRepositoryByID(ctx, repo.ID)
 		if err != nil {
 			return err
@@ -226,16 +226,8 @@ func ConvertForkToNormalRepository(ctx context.Context, repo *repo_model.Reposit
 
 		repo.IsFork = false
 		repo.ForkID = 0
-
-		if err := updateRepository(ctx, repo, false); err != nil {
-			log.Error("Unable to update repository %-v whilst converting from fork. Error: %v", repo, err)
-			return err
-		}
-
-		return nil
+		return repo_model.UpdateRepositoryColsNoAutoTime(ctx, repo, "is_fork", "fork_id")
 	})
-
-	return err
 }
 
 type findForksOptions struct {
diff --git a/services/repository/generate.go b/services/repository/generate.go
index 77a43b4e39..867b5d7855 100644
--- a/services/repository/generate.go
+++ b/services/repository/generate.go
@@ -253,43 +253,35 @@ func generateRepoCommit(ctx context.Context, repo, templateRepo, generateRepo *r
 	return initRepoCommit(ctx, tmpDir, repo, repo.Owner, defaultBranch)
 }
 
-func generateGitContent(ctx context.Context, repo, templateRepo, generateRepo *repo_model.Repository) (err error) {
-	tmpDir, cleanup, err := setting.AppDataTempDir("git-repo-content").MkdirTempRandom("gitea-" + repo.Name)
+// GenerateGitContent generates git content from a template repository
+func GenerateGitContent(ctx context.Context, templateRepo, generateRepo *repo_model.Repository) (err error) {
+	tmpDir, cleanup, err := setting.AppDataTempDir("git-repo-content").MkdirTempRandom("gitea-" + generateRepo.Name)
 	if err != nil {
-		return fmt.Errorf("failed to create temp dir for repository %s: %w", repo.FullName(), err)
+		return fmt.Errorf("failed to create temp dir for repository %s: %w", generateRepo.FullName(), err)
 	}
 	defer cleanup()
 
-	if err = generateRepoCommit(ctx, repo, templateRepo, generateRepo, tmpDir); err != nil {
+	if err = generateRepoCommit(ctx, generateRepo, templateRepo, generateRepo, tmpDir); err != nil {
 		return fmt.Errorf("generateRepoCommit: %w", err)
 	}
 
 	// re-fetch repo
-	if repo, err = repo_model.GetRepositoryByID(ctx, repo.ID); err != nil {
+	if generateRepo, err = repo_model.GetRepositoryByID(ctx, generateRepo.ID); err != nil {
 		return fmt.Errorf("getRepositoryByID: %w", err)
 	}
 
 	// if there was no default branch supplied when generating the repo, use the default one from the template
-	if strings.TrimSpace(repo.DefaultBranch) == "" {
-		repo.DefaultBranch = templateRepo.DefaultBranch
+	if strings.TrimSpace(generateRepo.DefaultBranch) == "" {
+		generateRepo.DefaultBranch = templateRepo.DefaultBranch
 	}
 
-	if err = gitrepo.SetDefaultBranch(ctx, repo, repo.DefaultBranch); err != nil {
+	if err = gitrepo.SetDefaultBranch(ctx, generateRepo, generateRepo.DefaultBranch); err != nil {
 		return fmt.Errorf("setDefaultBranch: %w", err)
 	}
-	if err = UpdateRepository(ctx, repo, false); err != nil {
+	if err = repo_model.UpdateRepositoryColsNoAutoTime(ctx, generateRepo, "default_branch"); err != nil {
 		return fmt.Errorf("updateRepository: %w", err)
 	}
 
-	return nil
-}
-
-// GenerateGitContent generates git content from a template repository
-func GenerateGitContent(ctx context.Context, templateRepo, generateRepo *repo_model.Repository) error {
-	if err := generateGitContent(ctx, generateRepo, templateRepo, generateRepo); err != nil {
-		return err
-	}
-
 	if err := repo_module.UpdateRepoSize(ctx, generateRepo); err != nil {
 		return fmt.Errorf("failed to update size for repository: %w", err)
 	}
diff --git a/services/repository/migrate.go b/services/repository/migrate.go
index 0859158b89..0a3dc45339 100644
--- a/services/repository/migrate.go
+++ b/services/repository/migrate.go
@@ -220,10 +220,14 @@ func MigrateRepositoryGitData(ctx context.Context, u *user_model.User,
 		}
 
 		repo.IsMirror = true
-		if err = UpdateRepository(ctx, repo, false); err != nil {
+		if err = repo_model.UpdateRepositoryColsNoAutoTime(ctx, repo, "num_watches", "is_empty", "default_branch", "default_wiki_branch", "is_mirror"); err != nil {
 			return nil, err
 		}
 
+		if err = repo_module.UpdateRepoSize(ctx, repo); err != nil {
+			log.Error("Failed to update size for repository: %v", err)
+		}
+
 		// this is necessary for sync local tags from remote
 		configName := fmt.Sprintf("remote.%s.fetch", mirrorModel.GetRemoteName())
 		if stdout, _, err := git.NewCommand("config").
diff --git a/services/repository/repository.go b/services/repository/repository.go
index 739ef1ec38..0cdce336d4 100644
--- a/services/repository/repository.go
+++ b/services/repository/repository.go
@@ -127,9 +127,42 @@ func UpdateRepository(ctx context.Context, repo *repo_model.Repository, visibili
 func MakeRepoPublic(ctx context.Context, repo *repo_model.Repository) (err error) {
 	return db.WithTx(ctx, func(ctx context.Context) error {
 		repo.IsPrivate = false
-		if err = updateRepository(ctx, repo, true); err != nil {
-			return fmt.Errorf("MakeRepoPublic: %w", err)
+		if err := repo_model.UpdateRepositoryColsNoAutoTime(ctx, repo, "is_private"); err != nil {
+			return err
+		}
+
+		if err = repo.LoadOwner(ctx); err != nil {
+			return fmt.Errorf("LoadOwner: %w", err)
 		}
+		if repo.Owner.IsOrganization() {
+			// Organization repository need to recalculate access table when visibility is changed.
+			if err = access_model.RecalculateTeamAccesses(ctx, repo, 0); err != nil {
+				return fmt.Errorf("recalculateTeamAccesses: %w", err)
+			}
+		}
+
+		// Create/Remove git-daemon-export-ok for git-daemon...
+		if err := checkDaemonExportOK(ctx, repo); err != nil {
+			return err
+		}
+
+		forkRepos, err := repo_model.GetRepositoriesByForkID(ctx, repo.ID)
+		if err != nil {
+			return fmt.Errorf("getRepositoriesByForkID: %w", err)
+		}
+
+		if repo.Owner.Visibility != structs.VisibleTypePrivate {
+			for i := range forkRepos {
+				if err = MakeRepoPublic(ctx, forkRepos[i]); err != nil {
+					return fmt.Errorf("MakeRepoPublic[%d]: %w", forkRepos[i].ID, err)
+				}
+			}
+		}
+
+		// If visibility is changed, we need to update the issue indexer.
+		// Since the data in the issue indexer have field to indicate if the repo is public or not.
+		issue_indexer.UpdateRepoIndexer(ctx, repo.ID)
+
 		return nil
 	})
 }
@@ -137,9 +170,51 @@ func MakeRepoPublic(ctx context.Context, repo *repo_model.Repository) (err error
 func MakeRepoPrivate(ctx context.Context, repo *repo_model.Repository) (err error) {
 	return db.WithTx(ctx, func(ctx context.Context) error {
 		repo.IsPrivate = true
-		if err = updateRepository(ctx, repo, true); err != nil {
-			return fmt.Errorf("MakeRepoPrivate: %w", err)
+		if err := repo_model.UpdateRepositoryColsNoAutoTime(ctx, repo, "is_private"); err != nil {
+			return err
+		}
+
+		if err = repo.LoadOwner(ctx); err != nil {
+			return fmt.Errorf("LoadOwner: %w", err)
 		}
+		if repo.Owner.IsOrganization() {
+			// Organization repository need to recalculate access table when visibility is changed.
+			if err = access_model.RecalculateTeamAccesses(ctx, repo, 0); err != nil {
+				return fmt.Errorf("recalculateTeamAccesses: %w", err)
+			}
+		}
+
+		// If repo has become private, we need to set its actions to private.
+		_, err = db.GetEngine(ctx).Where("repo_id = ?", repo.ID).Cols("is_private").Update(&activities_model.Action{
+			IsPrivate: true,
+		})
+		if err != nil {
+			return err
+		}
+
+		if err = repo_model.ClearRepoStars(ctx, repo.ID); err != nil {
+			return err
+		}
+
+		// Create/Remove git-daemon-export-ok for git-daemon...
+		if err := checkDaemonExportOK(ctx, repo); err != nil {
+			return err
+		}
+
+		forkRepos, err := repo_model.GetRepositoriesByForkID(ctx, repo.ID)
+		if err != nil {
+			return fmt.Errorf("getRepositoriesByForkID: %w", err)
+		}
+		for i := range forkRepos {
+			if err = MakeRepoPrivate(ctx, forkRepos[i]); err != nil {
+				return fmt.Errorf("MakeRepoPrivate[%d]: %w", forkRepos[i].ID, err)
+			}
+		}
+
+		// If visibility is changed, we need to update the issue indexer.
+		// Since the data in the issue indexer have field to indicate if the repo is public or not.
+		issue_indexer.UpdateRepoIndexer(ctx, repo.ID)
+
 		return nil
 	})
 }