Because of change I28ae5713, the commit message lost the "into HEAD" and
caused the MergeCommandTest to fail. This change fixes it.

Bug: 336059
Change-Id: Ifac0138c6c6d66c40d7295b5e11ff3cd98bc9e0c

When MergeMessageFormatter was given a symbolic ref HEAD which points to
refs/heads/master (which is the case when merging a branch in EGit), it
would result in a merge message like the following:

  Merge branch 'a' into HEAD

But it should print the following (as C Git does):

  Merge branch 'a'

The solution is to use the leaf ref when checking for refs/heads/master.

Change-Id: I28ae5713b7e8123a0176fc6d7356e469900e7e97

There is no point in pushing all of the files within the edge
commits into the delta search when making a thin pack.  This floods
the delta search window with objects that are unlikely to be useful
bases for the objects that will be written out, resulting in lower
data compression and higher transfer sizes.

Instead observe the path of a tree or blob that is being pushed
into the outgoing set, and use that path to locate up to WINDOW
ancestor versions from the edge commits.  Push only those objects
into the edgeObjects set, reducing the number of objects seen by the
search window.  This allows PackWriter to only look at ancestors
for the modified files, rather than all files in the project.
Limiting the search to WINDOW size makes sense, because more than
WINDOW edge objects will just skip through the window search as
none of them need to be delta compressed.

To further improve compression, sort edge objects into the front
of the window list, rather than randomly throughout.  This puts
non-edges later in the window and gives them a better chance at
finding their base, since they search backwards through the window.

These changes make a significant difference in the thin-pack:

  Before:
    remote: Counting objects: 144190, done
    remote: Finding sources: 100% (50275/50275)
    remote: Getting sizes: 100% (101405/101405)
    remote: Compressing objects: 100% (7587/7587)
    Receiving objects: 100% (50275/50275), 24.67 MiB | 9.90 MiB/s, done.
    Resolving deltas: 100% (40339/40339), completed with 2218 local objects.

    real    0m30.267s

  After:
    remote: Counting objects: 61549, done
    remote: Finding sources: 100% (50275/50275)
    remote: Getting sizes: 100% (18862/18862)
    remote: Compressing objects: 100% (7588/7588)
    Receiving objects: 100% (50275/50275), 11.04 MiB | 3.51 MiB/s, done.
    Resolving deltas: 100% (43160/43160), completed with 5014 local objects.

    real    0m22.170s

The resulting pack is 13.63 MiB smaller, even though it contains the
same exact objects.  82,543 fewer objects had to have their sizes
looked up, which saved about 8s of server CPU time.  2,796 more
objects from the client were used as part of the base object set,
which contributed to the smaller transfer size.

Change-Id: Id01271950432c6960897495b09deab70e33993a9
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>
Sigend-off-by: Chris Aniszczyk <caniszczyk@gmail.com>

Enhance the Git API to support cloning repositories.

Bug: 334763
Change-Id: Ibe1191498dceb9cbd1325aed85b4c403db19f41e
Signed-off-by: Chris Aniszczyk <caniszczyk@gmail.com>

After consulting with Christian Halstrick, it turned out that the
handling of rebase during pull was implemented incorrectly.

Change-Id: I40f03409e080cdfeceb21460150f5e02a016e7f4
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

The new addIfAbsent() method combines get() with add(), but does
it in a single step so that the common case of get() returning null
for a new object can immediately insert the object into the map.

Change-Id: Ib599ab4de13ad67665ccfccf3ece52ba3222bcba
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

Rebase must honor the upstream configuration

branch.<branchname>.rebase

Change-Id: Ic94f263d3f47b630ad75bd5412cb4741bb1109ca
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

This bug was hidden by an incomplete test: the current Rebase
implementation using the "git rebase -i" pattern does not work
correctly if fast-forwarding is involved. The reason for this is that
the log command does not return any commits in this case.
In addition, a check for already merged commits was introduced to
avoid spurious conflicts.

Change-Id: Ib9898fe0f982fa08e41f1dca9452c43de715fdb6
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

Properly handle return value of java.io.File.createNewFile().

Change-Id: I3a74cc84cd126ca1a0eaccc77b2944d783ff0747
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

java.io.File.mkdir() and mkdirs() report failure as an exceptional
return value false. Fix the code which silently ignored this
exceptional return value.

Change-Id: I41244f4b9d66176e68e2c07e2329cf08492f8619
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

This problem surfaced since EGit Core ResetOperationTest is failing
since change I26806d21. JGit detected checkout conflict for untracked
files which never were tracked by the repository. 

"git reset --hard" in c git also doesn't remove such untracked files.

Change-Id: Icc8e1c548ecf6ed48bd2979c81eeb6f578d347bd
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

When DirCacheCheckout was checking out it was silently
overwriting untracked files. This is only ok if the
files are also ignored. Untracked and not ignored files
should not be overwritten. This fix adds checks for
this situation.
Because this change in the behaviour also broke tests
which expected that a checkout will overwrite untracked
files (PullCommandTest) these tests have to be modified
also.

Bug: 333093
Change-Id: I26806d2108ceb64c51abaa877e11b584bf527fc9
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>
Signed-off-by: Chris Aniszczyk <caniszczyk@gmail.com>

Change-Id: Ia876fda0d4cf91b5326d48014e88503de93a1f38
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>

By moving the logic that parses a pack stream from the network (or
a bundle) into a type that can be constructed by an ObjectInserter,
repository implementations have a chance to inject their own logic
for storing object data received into the destination repository.

The API isn't completely generic yet, there are still quite a few
assumptions that the PackParser subclass is storing the data onto
the local filesystem as a single file.  But its about the simplest
split of IndexPack I can come up with without completely ripping
the code apart.

Change-Id: I5b167c9cc6d7a7c56d0197c62c0fd0036a83ec6c
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>
Signed-off-by: Chris Aniszczyk <caniszczyk@gmail.com>

RevFilter.include()'s documentation promises the RevCommit's
body is parsed before include is invoked.  This wasn't always
true if the commit was parsed once, had its body discarded,
the RevWalk was reset() and started a new traversal.

Change-Id: Ie5cafde09ae870712b165d8a97a2c9daf90b1dbd
Signed-off-by: Chris Aniszczyk <caniszczyk@gmail.com>

Additionally, defined the NoteMap.getNote method which returns a Note
instance.  These changes were necessary to enable implementation of
the NoteMerger interface (the merge method needs to instantiate a
Note) and to enable direct use of NoteMerger which expects instances
of Note class as its paramters.  Implementing creation of code review
summary notes in Gerrit [1] will make use of both of these features.

[1] https://review.source.android.com/#change,20045

Change-Id: I627aefcedcd3434deecd63fa1d3e90e303b385ac
Signed-off-by: Sasa Zivkov <sasa.zivkov@sap.com>
Signed-off-by: Chris Aniszczyk <caniszczyk@gmail.com>

The java.io.File.createNewFile() method for creating new empty files
reports failure by returning false. To ease proper checking of return
values provide a utility method wrapping createNewFile() throwing
IOException on failure.

Change-Id: I42a3dc9d8ff70af62e84de396e6a740050afa896
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

If remote branches are present they can not be added
to the RefMap from the local branches - the two RefMaps
have a different value of 'prefix' and consequently an
IllegalArgumentException is thrown.

A test in NLSTest was mixing the "old" and the "new" way of handling
concurrency. This change makes use of the java.util.concurrent facilities to
control concurrency and removes the code that was directly dealing with Thread
objects.

Change-Id: Ie7267776e988a48a5443f0f3fe4eb43e79eee4b1
Signed-off-by: Sasa Zivkov <sasa.zivkov@sap.com>

Merging Git notes branches has several differences from merging "normal"
branches. Although Git notes are initially stored as one flat tree the
tree may fanout when the number of notes becomes too large for efficient
access. In this case the first two hex digits of the note name will be
used as a subdirectory name and the rest 38 hex digits as the file name
under that directory. Similarly, when number of notes decreases a fanout
tree may collapse back into a flat tree. The Git notes merge algorithm
must take into account possibly different tree structures in different
note branches and must properly match them against each other.

Any conflict on a Git note is, by default, resolved by concatenating
the two conflicting versions of the note. A delete-edit conflict is, by
default, resolved by keeping the edit version.

The note merge logic is pluggable and the caller may provide custom
note merger that will perform different merging strategy.

Additionally, it is possible to have non-note entries inside a notes
tree. The merge algorithm must also take this fact into account and
will try to merge such non-note entries. However, in case of any merge
conflicts the merge operation will fail. Git notes merge algorithm is
currently not trying to do content merge of non-note entries.

Thanks to Shawn Pearce for patiently answering my questions related to
this topic, giving hints and providing code snippets.

Change-Id: I3b2335c76c766fd7ea25752e54087f9b19d69c88
Signed-off-by: Sasa Zivkov <sasa.zivkov@sap.com>
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

Patterns containing only a trailing slash have to be treated
as "global" patterns. For example: "classes/" matches "classes"
as well as "dir/classes" directory.

When an application asks for the names in a section, it may want to
see the existing case that was stored by the user.  For example,
Gerrit Code Review wants to store a configuration block like:

  [access "refs/heads/master"]
    label-Code-Review = group Developers

and although the name label-Code-Review is case-insensitive, it wants
to display the case as it appeared in the configuration file.

When enumerating section names or variable names (both of which are
case-insensitive), Config now keeps track of the string that first
appeared, and presents them in file order, permitting applications to
use this information.  To maintain case-insensitive behavior, the
contains() method of the returned Set<String> still performs a
case-insensitive compare.

This is a behavior change if the caller enumerates the returned
Set<String> and copies it to his own Set<String>, and then performs
contains() tests against that, as the strings are now the original
case from the configuration block.  But I don't think anyone actually
does this, as the returned sets are immutable and are cached.

Change-Id: Ie4e060ef7772958b2062679e462c34c506371740
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

We will need to iterate over all notes of a NoteMap, at least this will be
needed for testing purposes. This change also implied making the Note class
public.

Change-Id: I9b0639f9843f457ee9de43504b2499a673cd0e77
Signed-off-by: Sasa Zivkov <sasa.zivkov@sap.com>

These test classes needed new @Test annotations to be found by the
JUnit 4 test runner.

Change-Id: I61b6a8ebd468fa2d13fad5bf9cbd8f81a6f67e41
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

This is almost reverted cherry-pick, and the implementation is
almost identical. It orders the input to merge differently to get
the effect and produces a different commit message with the
default author, rather than the original author.

Change-Id: I39970091d9f7406ae7168b8efaab23a5e2c16bad
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>

Change-Id: I3a5b877efd3a58ad463c47bb663d073baea81dda
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>

The test was never run from maven, because its name did not end
in a way that was recognized by the pom. After rename it failed
because it did not find its resources.

Rename test class and move resources to the resources folder

Change-Id: I74a7ef1373cd902e1d05ff6ea38f8648b5fc5700
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>

Eclipse has some problem re-running single JUnit tests if
the tests are in Junit 3 format, but the JUnit 4 launcher
is used. This was quite unnecessary and the move was not
completed. We still have no JUnit4 test.

This completes the extermination of JUnit3. Most of the
work was global searce/replace using regular expression,
followed by numerous invocarions of quick-fix and organize
imports and verification that we had the same number of
tests before and after.

- Annotations were introduced.
- All references to JUnit3 classes removed
- Half-good replacement for getting the test name. This was
  needed to make the TestRngs work. The initialization of
  TestRngs was also made lazily since we can not longer find
  out the test name in runtime in the @Before methods.
- Renamed test classes to end with Test, with the exception
  of TestTranslateBundle, which fails from Maven
- Moved JGitTestUtil to the junit support bundle

Change-Id: Iddcd3da6ca927a7be773a9c63ebf8bb2147e2d13
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

These settings are stored in <prefix>/etc/gitconfig. The C Git
binary is installed in <prefix>/bin, so we look for the C Git
executable to find this location, first by looking at the PATH
environment variable and then by attemting to launch bash as
a login shell to find out.

Bug: 333216
Change-Id: I1bbee9fb123a81714a34a9cc242b92beacfbb4a8
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>

We cannot use SystemReader to get the time, unless we do that consistently,
which is harder to do and be sure we are really testing what we want.

Then we need to update our lastRead variable whenever we conclude that
our file is not racily clean according to lastRead. It may well be clean,
but we do not know that until we check the system clock again.

Finally add a test for this class.

Change-Id: I1894b032b9bd359d1b5325e5472d48e372599e4c
Signed-off-by: Robin Rosenberg <robin.rosenberg@dewire.com>

If the 'TREE' extension contains an invalid subtree that has
been removed, DirCacheIterator still tried to access it due to
an invalid childCnt field within the parent DirCacheTree object.
This is easy for a user to do, they just need to move all files
out of a subdirectory.

For example, the input for the JUnit test case for this bug was
built using the following C Git sequence:

  mkdir -p a/b
  touch a/b/c q
  git add a/b/c q
  git write-tree
  git mv a/b/c a/a

After the last step, the subdirectory a/b is empty, as its only
file was moved into the parent directory.  Because of the earlier
`git write-tree` operation, there is a 'TREE' extension present, but
the a and a/b subdirectories have been marked invalid by the rename.

When JGit tried to iterate over the a tree, it tried to correct
childCnt to be zero as a/b no longer exists, but it failed to
update childCnt.

Change-Id: I7a0f78fc48a36b1a83252d354618f6807fca0426
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

Avoid the dependency on the local filesystem by using only an in-core
DirCache instance.  Each test case builds up the index from scratch
anyway through a DirCacheBuilder.

Change-Id: I5decf6bffc3ed35bf1d3e4ad5cc095891c80b772
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

As discussed in

http://egit.eclipse.org/r/#change,2127

we should use paths relative the working directory instead of Files to
notify the caller about conflicts and nondeleted files.

Change-Id: I034c7bd846f0df78d97bc246f38d411f29713dde
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

Change-Id: Ieacae01de20d7729ef34e6e6a1523fbaf9db41a8
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

Change-Id: I619b00d8a3b0770c9fd1dc3314794f915ea80604
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

The CheckoutCommand does not handle names other than local branch
names properly; it must detach HEAD if such a name is encountered (for
example a commit ID or a remote tracking branch).

Change-Id: I5d55177f4029bcc34fc2649fd564b125a2929cc4
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>
Signed-off-by: Chris Aniszczyk <caniszczyk@gmail.com>

These tests doesn't need to use WriteTree anymore.  There are
other means of creating tree objects in the repository that aren't
deprecated, so use those instead.

Change-Id: I89cd8ab54c66964a5fddc0a045f1c0f1c7c49055
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

This is needed by callers to determine checkout conflicts and
possible files that were not deleted during the checkout so that they
can present the end user with a better Exception description and retry
to delete the undeleted files later, respectively.

Change-Id: I037930da7b1a4dfb24cfa3205afb51dc29e4a5b8
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

When the Config is changed, it should be saved back to its local
file.  This ensure that a future call to getConfig() won't wipe
out the edits that were just made.

Change-Id: Id46d3f85d1c9b377f63ef861b72824e1aa060eee
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

Each time getConfig() is called on FileRepository, it checks the
last modified time of both ~/.gitconfig and $GIT_DIR?config.  If
$GIT_DIR/config appears to have been modified, it is read back in
from disk and the current config is wiped out.

When mutating a configuration file, this may cause in-memory edits
to disappear.  To avoid that callers need to avoid calling getConfig
until after the configuration has been saved to disk.

Unfortunately the API is still horribly broken.  Configuration should
be modified only while a lock is held on the configuration file, very
similar to the way a ref is updated via its locking protocol.  But our
existing API is really broken for that so we'll have to defer cleaning
up the edit path for a future change.

Change-Id: I5888dd97bac20ddf60456c81ffc1eb8df04ef410
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

When checking whether a file in the working tree has been modified -
WorkingTreeIterator.isModified() - we should not trust the filemode
in case of symbolic links, but check the timestamp and also the
content, if requested. Without this fix symlinks will always be shown
in EGit as modified files on Windows systems.

Change-Id: I367c807df5a7e85e828ddacff7fee7901441f187
Signed-off-by: Philipp Thun <philipp.thun@sap.com>

FileWriter uses the platform default encoding, which might not
be UTF-8.  JGit prefers UTF-8 everywhere for string encodings,
so make the unit tests more predictable by ensuring use of UTF-8.

Change-Id: I75bb9f962ee230b73ca3a942bffd7a8a28674ba5
Signed-off-by: Shawn O. Pearce <spearce@spearce.org>

The java.io.File methods for creating directories report failure by
returning false. To ease proper checking of return values provide
utility methods wrapping mkdir() and mkdirs() which throw IOException
on failure.

Also fix the tests to store test data under a trash folder and cleanup
after test.

Change-Id: I09c7f9909caf7e25feabda9d31e21ce154e7fcd5
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>
Signed-off-by: Chris Aniszczyk <caniszczyk@gmail.com>

This is needed to ensure interoperability with the command line: if
the git-rebase-todo file was created manually (by git rebase -i in the
command line), and any commands other than pick are used (reword,
edit, fixup, squash) JGit must abort as it does not understand these
commands yet.
The same is true if an unknown command is found (e.g. due to a typo);
this is the same behavior as shown by the command line.

Change-Id: I2322014f69460361f7fc09da223e8a5c31f100dd
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

Always use streaming (for SHA-checksum & collision detection)
when indexing whole blobs, regardless of their size.

Positives:
* benefits of bugfix #312868 will apply to all runtimes, without
  additional conf for mem-constrained JVMs (5MB huge for some)
* no byte array allocation
  (re-uses readBuffer instead of allocating new full-size array)
* mildly better overall performance
  (given the usual blob-does-not-need-collision-checking case)
* removes unnecessary code

Negative:
* doubles the disk IO for a blob comparision
  (comparitively rare occurance)

I perf-tested a range of threshold sizes against a random selection
of packfiles I found on my harddrive, the results are here:

https://spreadsheets.google.com/ccc?key=tLCQElyyd2RKN9QevfvgwGQ&hl=en_GB#gid=1

My interpretation of the results is that the streaming size threshold
isn't beneficial (actually seems to be very slightly detrimental) -so
we should just get rid of it. This tallies with some of the comments
Shawn & I had for the default value of streamFileThreshold in the
review for I862afd4c:

http://egit.eclipse.org/r/#patch,sidebyside,2040,2,org.eclipse.jgit/src/org/eclipse/jgit/transport/IndexPack.java

The perf-test code is here: https://gist.github.com/735402
It's a bit scruffy but basically does 10 runs (in randomised order)
for each threshold size on various packfiles, waiting a second
between each pack-indexing to allow GC to catch up. I know it's not
perfect - proper perf testing is hard to do :-)

For convenience provide an option to skip deletion of non-existing
files. Also add some tests for deletion methods in FileUtils.

Change-Id: I33e355cfcdc19367d50208150ee49a4a06394890
Signed-off-by: Matthias Sohn <matthias.sohn@sap.com>

This change contains a bunch of unit tests for the newly introduced
IndexDiffFilter. With these tests the code coverage of
IndexDiffFilter.include() is now 100%, i.e. every special case is
tested at least once.

Change-Id: Ib248d1cd16084f9c8e099006af151814c63c5941
Signed-off-by: Philipp Thun <philipp.thun@sap.com>

Rebase would update the original HEAD to the wrong commit when
"skipping" the last commit after a merged commit.

Includes a test for the specific situation.

Change-Id: I087314b1834a3f11a4561f04ca5c21411d54d993
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>

If a treewalk walks also over index and the workingtree then the
IndexDiffFilter filter can be used which works much faster then
the semantically equivalent ANY_DIFF filter. This is because this
filter can better avoid computing SHA-1 ids over the content of
working-tree files which is very costly.

This fix will significantly improve the performance of e.g.
EGit's commit dialog.

Change-Id: I2a51816f4ed9df2900c6307a54cd09f50004266f
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>
Signed-off-by: Philipp Thun <philipp.thun@sap.com>

For --continue, the Rebase command asserts that there are no unmerged
paths in the current repository. Then it checks if a commit is needed.
If yes, the commit message and author are taken from the author_script
and message files, respectively, and a commit is performed before the
next step is applied.
For --skip, the workspace is reset to the current HEAD before applying
the next step.

Includes some tests and a refactoring that extracts Strings in the
code into constants.


Change-Id: I72d9968535727046e737ec20e23239fe79976179
Signed-off-by: Mathias Kinzler <mathias.kinzler@sap.com>
Signed-off-by: Christian Halstrick <christian.halstrick@sap.com>