* Allow commandline tests to use raw output

* Add support for pull with --rebase and --no-rebase

* Declare all thrown exceptions in Repository

* Import non-java.* JRE packages

* Adapt Status and CleanCommand to support cleaning directories

* Add reflog command to JGit CLI

* CheckoutCommand: Support checking out ours and theirs

* Make an exception for the formatting rules (turn off) for some files

* Harmonize the JDT settings within JGit

* DirCacheEditor: Apply PathEdit for each stage

* Add missing @since tags to mark API added in 2.2

* Add support for --no-ff while merging

* Add a test for org.eclipse.jgit.pgm.Tag

* Do not fail when checking out HEAD

* Prefix an abnormal CLI command termination with 'fatal:'

* CommitCommand: Ensure unmerged paths are added correctly with setOnly

* Fix formatting in org.eclipse.jgit.pgm.CLIText

* diff, log -p: do not use outs before it is initialized

* Fix redundant null check warning in Repository

* Add the an event and listener for a dfs PackIndex being loaded.

* Add ReflogCommandTest#testAmendReflog

* ResetCommand: Use DirCacheBuilder in resetIndex

* ResetCommand: Correctly reset unmerged paths in resetIndexForPaths

* Add isIndexLoaded() to DfsPackFile.

* [blame] Don't pass null to PersonIdent constructor

* Add Javadoc description for packages

* Refactor ResolveMergerTest to allow testing multiple strategies

* Pull up method for creating DirCacheEntry into RepositoryTestCase

* Suppress resource warnings with Java 7

* Extend Javadoc of CheckoutCommand and add examples

* Add a check in fstick that the reference file exists

* Fix for Iff768422c, use offset 0 when going back to work tree iterator

* Don't allow null name or e-mail in PersonIdent

* Fix Javadoc formatting of org.eclipse.jgit.diff package

* Simplify push error message when ref already exists

* AbstractTreeIterator: Add toString with entry path

* StashCreateCommand: Abort in case of unmerged paths

* Update packaging build to use Tycho 0.16

* Update jgit's last release version for API change reports

* Add a hint on the purpose of JGitInternalException to the constructor

* RevWalk: Add link to parseHeaders/parseBody in Javadoc of lookupCommit

* Make BlameGenerator comments more clear

* CommitCommand: Use original author on amend if author is not set
* CommitCommand: Don't allow amending on initial commit

* Add --squash option to org.eclipse.jgit.pgm.Merge

* Fix unstable test

* Update README

* Fix compile error (method not available in 1.5)

* Remove unused import introduced with 8f706db5

* Revert "The constructor CmdLineException(String) is deprecated"

* Provide a convenient read() in RepositoryTestCase